View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11966_low_5 (Length: 385)
Name: NF11966_low_5
Description: NF11966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11966_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 27425976 - 27425579
Alignment:
| Q |
1 |
ccaaccaaatccgaagccaagcaacacattatcatat-----tagcaatgcttcaaccaagaccatcactttttactgtttaactgcataatttagtgta |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27425976 |
ccaaccaaatccgaagccaagcaacacattatcatatcatattagcaatgcttcaaccaagaccatcactttttactgtttaactgcataatttagtgta |
27425877 |
T |
|
| Q |
96 |
gaaaaataatatcaaaatctgcatataatgatatagcagttgcaacattgaataaagtgtttttactcaccttccatccacaatctagatgccaatattt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27425876 |
gaaaaataatatcaaaatctgcatataatgatataacagttgcaacattgaataaagtgtttttactcaccttccatccacaatctagatgccaatattt |
27425777 |
T |
|
| Q |
196 |
cgctatata-----------ttatggttagcatttgcccttcttgaactttatcttcttctccaaatcatgtcaccaaaagaacaattagaaacttgaat |
284 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27425776 |
cgctatatataacagttcctttatggttagcatttgcccttcttgaactttatcttcttctccaaatcatgtcaccaaaagaacaattagaaacttgaat |
27425677 |
T |
|
| Q |
285 |
aatcaccaaccattcactcattcttctctttcacgtggccaccataagcctgtcataaatacgactctcctatggtgacgttctctttcttctctctc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
27425676 |
aatcaccaaccattcactcattcttctctttcacgtggccaccataagcctgtcataaatgcggctctcctatggtgacgttctctttcttctctctc |
27425579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University