View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11966_low_9 (Length: 325)

Name: NF11966_low_9
Description: NF11966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11966_low_9
NF11966_low_9
[»] chr7 (10 HSPs)
chr7 (1-311)||(18953002-18953312)
chr7 (1-311)||(18997695-18998005)
chr7 (1-311)||(18983049-18983359)
chr7 (181-236)||(19597826-19597881)
chr7 (102-146)||(19357677-19357721)
chr7 (1-36)||(18988126-18988161)
chr7 (193-280)||(19604591-19604678)
chr7 (80-147)||(19604733-19604800)
chr7 (177-263)||(29881095-29881181)
chr7 (1-37)||(661023-661059)
[»] scaffold0464 (1 HSPs)
scaffold0464 (108-146)||(7837-7875)
[»] scaffold0097 (1 HSPs)
scaffold0097 (183-232)||(16548-16597)
[»] chr2 (3 HSPs)
chr2 (183-232)||(20712709-20712758)
chr2 (179-232)||(20967541-20967594)
chr2 (13-45)||(18921087-18921119)
[»] chr3 (2 HSPs)
chr3 (108-146)||(12735055-12735093)
chr3 (106-146)||(32579121-32579161)
[»] chr5 (1 HSPs)
chr5 (177-238)||(24331069-24331130)
[»] chr1 (1 HSPs)
chr1 (177-238)||(21855553-21855614)
[»] chr6 (1 HSPs)
chr6 (190-250)||(20770502-20770562)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 18953312 - 18953002
Alignment:
Q  1 ttcaatttaggcgataatgtttggaggcatattcaaagttttcctgtggctccttttatggatatttccactagtccccatactcatctgggtattaatg 100  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18953312 ttcaattttggcgataatgtttggagacatattcaaagttttcctgtggctccttttatggatatttccacttgtccccatactcatctgggtattaatg 18953213  T
Q  101 ctggcgtgtatgtgagtggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18953212 ctggcgtgtatgtgagtggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgat 18953113  T
Q  201 catctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18953112 catctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatg 18953013  T
Q  301 gactccctatg 311  Q
    |||||||||||    
T  18953012 gactccctatg 18953002  T

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Target: chr7; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 18998005 - 18997695
Alignment:
Q  1 ttcaatttaggcgataatgtttggaggcatattcaaagttttcctgtggctccttttatggatatttccactagtccccatactcatctgggtattaatg 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18998005 ttcaatttaggcgataatgtttggagacatattcaaagttttcctgtggctccttttatggatatttccactagtccccatactcatctgggtattaatg 18997906  T
Q  101 ctggcgtgtatgtgagtggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgat 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997905 ctggcgtgtatgtgagtggcactgttaattggttggccattcgaaacgcgtgcccatgtaattttgaattgaaatctattactattgaccaatttgtgat 18997806  T
Q  201 catctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997805 catctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatg 18997706  T
Q  301 gactccctatg 311  Q
    |||||||||||    
T  18997705 gactccctatg 18997695  T

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Target: chr7; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 18983359 - 18983049
Alignment:
Q  1 ttcaatttaggcgataatgtttggaggcatattcaaagttttcctgtggctccttttatggatatttccactagtccccatactcatctgggtattaatg 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18983359 ttcaatttaggcgataatgtttggagacatattcaaagttttcctgtggctccttttatggatatttccacttgtccccatactcatctgggtattaatg 18983260  T
Q  101 ctggcgtgtatgtgagtggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||    
T  18983259 ctggcgtgtatgtgagtggcactgttaactggttggccattcgaaacgcgtgtccatgtaattttgaattgaaatctattactattgaccaattcgtgat 18983160  T
Q  201 catctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18983159 catctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccaccctatctttcttgatg 18983060  T
Q  301 gactccctatg 311  Q
    |||||||||||    
T  18983059 gactccctatg 18983049  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 19597881 - 19597826
Alignment:
Q  181 actattgaccaatttgtgatcatctcccttgatttgaggacggagacatacaatca 236  Q
    |||||||||||||||||||||||||  ||||||||||  |||||||||||| ||||    
T  19597881 actattgaccaatttgtgatcatcttgcttgatttgattacggagacataccatca 19597826  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 19357677 - 19357721
Alignment:
Q  102 tggcgtgtatgtgagtggcactgttaactggttggccattcgaaa 146  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||||    
T  19357677 tggcgtgtatgtgagaggcactattaactggttggctattcgaaa 19357721  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18988161 - 18988126
Alignment:
Q  1 ttcaatttaggcgataatgtttggaggcatattcaa 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  18988161 ttcaatttaggcgataatgtttggagacatattcaa 18988126  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 19604678 - 19604591
Alignment:
Q  193 tttgtgatcatctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagc 280  Q
    ||||| |||||||||||||||||||| || |||||||||  |||| |||  || |||| |||||||||| ||||| |  |||||||||    
T  19604678 tttgttatcatctcccttgatttgagtactgagacataccgtcaacttcgtctgcctcgtggttttgataaagtgccacctgttgagc 19604591  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 19604800 - 19604733
Alignment:
Q  80 atactcatctgggtattaatgctggcgtgtatgtgagtggcactgttaactggttggccattcgaaac 147  Q
    |||||||| ||| |||||||  ||| |||||||||||||| ||| |||||||||||| ||||| ||||    
T  19604800 atactcatatggctattaataatggtgtgtatgtgagtggtactcttaactggttggtcattcaaaac 19604733  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 29881095 - 29881181
Alignment:
Q  177 tattactattgaccaatttgtgatcatctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatga 263  Q
    ||||||| ||||||||||||| ||  | || ||||||||| |||| |||||||||||||||| || ||| ||||   ||||||||||    
T  29881095 tattactgttgaccaatttgttattgtttcacttgatttggggactgagacatacaatcaatatcgactgcctccgagttttgatga 29881181  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 661059 - 661023
Alignment:
Q  1 ttcaatttaggcgataatgtttggaggcatattcaaa 37  Q
    ||||||||||||||||||||||||||  |||||||||    
T  661059 ttcaatttaggcgataatgtttggagaaatattcaaa 661023  T

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Target: scaffold0464 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 7837 - 7875
Alignment:
Q  108 gtatgtgagtggcactgttaactggttggccattcgaaa 146  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7837 gtatgtgagtggcactgttaactggttggctattcgaaa 7875  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 16597 - 16548
Alignment:
Q  183 tattgaccaatttgtgatcatctcccttgatttgaggacggagacataca 232  Q
    |||||| |||||||||||||||||||| |||||| ||| |||||||||||    
T  16597 tattgaacaatttgtgatcatctccctcgatttggggatggagacataca 16548  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 20712758 - 20712709
Alignment:
Q  183 tattgaccaatttgtgatcatctcccttgatttgaggacggagacataca 232  Q
    |||||| |||||||||||||||||||| |||||| ||| |||||||||||    
T  20712758 tattgaacaatttgtgatcatctccctcgatttggggatggagacataca 20712709  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 20967541 - 20967594
Alignment:
Q  179 ttactattgaccaatttgtgatcatctcccttgatttgaggacggagacataca 232  Q
    ||||| |||| |||||||||||||| |||||||||||| |||| ||||| ||||    
T  20967541 ttactgttgagcaatttgtgatcatttcccttgatttggggacagagacctaca 20967594  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 18921119 - 18921087
Alignment:
Q  13 gataatgtttggaggcatattcaaagttttcct 45  Q
    ||||||||||||||| |||||||||||||||||    
T  18921119 gataatgtttggagggatattcaaagttttcct 18921087  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 12735093 - 12735055
Alignment:
Q  108 gtatgtgagtggcactgttaactggttggccattcgaaa 146  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  12735093 gtatgtaagtggcactgttaactggttggctattcgaaa 12735055  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 32579161 - 32579121
Alignment:
Q  106 gtgtatgtgagtggcactgttaactggttggccattcgaaa 146  Q
    |||||||||||||||||| |||| |||||||| ||||||||    
T  32579161 gtgtatgtgagtggcactattaattggttggctattcgaaa 32579121  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 24331130 - 24331069
Alignment:
Q  177 tattactattgaccaatttgtgatcatctcccttgatttgaggacggagacatacaatcaat 238  Q
    ||||||| ||||||| ||||||||  | || |||||||||  ||||||||||||||||||||    
T  24331130 tattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaat 24331069  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 21855614 - 21855553
Alignment:
Q  177 tattactattgaccaatttgtgatcatctcccttgatttgaggacggagacatacaatcaat 238  Q
    ||||||| ||||||| ||||||||  | || |||||||||  ||||||||||||||||||||    
T  21855614 tattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaat 21855553  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 20770502 - 20770562
Alignment:
Q  190 caatttgtgatcatctcccttgatttgaggacggagacatacaatcaatttctactccctc 250  Q
    |||||||||||||||||||||||||||  ||  ||||||||||| || ||  |||||||||    
T  20770502 caatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctc 20770562  T

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