View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_high_15 (Length: 437)
Name: NF11967_high_15
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 45096797 - 45097217
Alignment:
| Q |
1 |
agacccaaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgtaaattgcaaaac |
100 |
Q |
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| T |
45096797 |
agacccaaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgtaaattgtaaaac |
45096896 |
T |
|
| Q |
101 |
ctaatctatttctaatataatcgtctctaatttggttaggcaactgagaccaccaagcataagaactcaaacttaaacgaagattagcaagctaatcagc |
200 |
Q |
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| T |
45096897 |
ctaatctatttctaatatagtcgtctctaatttggttaggcaactgaaaccaccaagcataagaactcaaacttaaacgaagattagcaagctaatcagc |
45096996 |
T |
|
| Q |
201 |
acattgatttactgctctgtaaatgtgaatagaatgaaatagaaggacgtagaggaaatgaaatagagacaattctctcatctgttcttcaatcaacggc |
300 |
Q |
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| T |
45096997 |
acgttgatttactgctctgtaaatgtgaatagaatgaaatagaaggacgtagaggaaatgaaatagagacaattctctcatctgttcttcaatcaacggc |
45097096 |
T |
|
| Q |
301 |
caagggacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagcactttatgctgcatttgtagcaccaatgagttcagtattaaga |
400 |
Q |
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| T |
45097097 |
cacgggacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagcactctatgctgcattcgtagcaccaatgagttcagtattaaga |
45097196 |
T |
|
| Q |
401 |
acatttgagatccctaaattg |
421 |
Q |
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| T |
45097197 |
acatttgagatccctaaattg |
45097217 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 11775891 - 11775932
Alignment:
| Q |
299 |
gccaagggacaaccttagaagacttgaaagccaagaaaacaa |
340 |
Q |
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| T |
11775891 |
gccaagggacaaccttagaagacttgaaagctaagaaaacaa |
11775932 |
T |
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