View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_high_24 (Length: 371)
Name: NF11967_high_24
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 48310927 - 48311291
Alignment:
| Q |
1 |
ttagcagctaacagttggtagaaataaaaaatagagaggaatattaattatttataggacattannnnnnnnnaatcaattacatttcaaaaactatatt |
100 |
Q |
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| T |
48310927 |
ttagcagctaacagttggtagaaataaaaaatagagaggaatattaattatttataggacattatttttttttaatcaattacatttcaaaaactatatt |
48311026 |
T |
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| Q |
101 |
atgttatacatcttagaatatgaatcaatgtaaaagaagtctcaaaattaagtatatggacaattatattgctagcaccgaaacacttggaaaatgttac |
200 |
Q |
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| T |
48311027 |
atgttatacatcttagaatatgaatcaatgtaaaagaagtctcaaaattaagtatatggacaattatattgctagcaccgaaacacttggaaaatgttac |
48311126 |
T |
|
| Q |
201 |
tactaatactaacaagacactcttagtcttaggttacctataattcaaaac------------cctttctcttgcccaaaataataaatcnnnnnnnnnn |
288 |
Q |
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| T |
48311127 |
tactaatactaacaagacactcttagtcttaggttacctataattcaaaaccctttcttcttacctttctcttgcccaaaataataaatctttttttatt |
48311226 |
T |
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| Q |
289 |
nnngacattttctgcttggttaact-aaaatgaatttggtatgtcgtttttcttgatgtacgcac |
352 |
Q |
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| T |
48311227 |
tttgacattttctgcttggttaactaaaaatgaatttggtatgtcgtttttcttgatgtacgcac |
48311291 |
T |
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