View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_high_27 (Length: 358)
Name: NF11967_high_27
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 171 - 343
Target Start/End: Complemental strand, 10507317 - 10507144
Alignment:
| Q |
171 |
gcattctgtaagaaaaaataaagtattttctatatccttcctacatag----tgtgggtctgtgtgacttgacaaagaaatagcttcctaactattaagc |
266 |
Q |
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| T |
10507317 |
gcattctgtaagaaaaaataaagtattttctatatccttcctacataggatgtgtgggtctgtgtgacttgacaaagaaatagcttcctaactattaagc |
10507218 |
T |
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| Q |
267 |
acatcaattaatgtgaaatttcaagtacgacataaaaaatattgtgtattgtgaacaacaacttgaaacctcttcat |
343 |
Q |
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| T |
10507217 |
aca---attaatgtgaaacttcaagtacaacatcaaaaatattgtgtattgtgaacaacaacttgaaacctcttcat |
10507144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 10507509 - 10507427
Alignment:
| Q |
64 |
gattgtccagagaccacctcgtatgtgacatgataaatgtatagagcttcagtatgcttcggtttgtagaaaaattaaaatag |
146 |
Q |
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| T |
10507509 |
gattgtccagagaccacctcgtatgtgacatgataaatgtatagagcttaagtatgcttcggttcgtagaaaaattaaaatag |
10507427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 10405090 - 10405121
Alignment:
| Q |
20 |
atatgcaaggtctggattcaaacctcggccac |
51 |
Q |
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| T |
10405090 |
atatgcaaggtctggattcaaacctcggccac |
10405121 |
T |
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