View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11967_high_29 (Length: 349)
Name: NF11967_high_29
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 14494820 - 14494501
Alignment:
| Q |
13 |
aaattggtggcttgaatttggctccggaatattggtagggtactggccatcgtttttgtttacacacttaagggatcatgcaagtatggtacaatttggt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14494820 |
aaattggtggcttgaatttggctccggaatattggtagggtactggccatcgtttttgtttacacacttaagggatcatgcaagtatggtacaatttggt |
14494721 |
T |
|
| Q |
113 |
ggagaaattgtgaattctagacaagggtcacacacttcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcatactttagga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14494720 |
ggagaaattgtgaattctagacaagggtcacacacttcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcatactttagga |
14494621 |
T |
|
| Q |
213 |
atttgcaagttgtggattgggataacaatttgataccattgtcaaatctaagggttctagcggatcatccaaattgctatgatatacaaggaggaataaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14494620 |
atttgcaagttgtggattgggataacaatttgataccattgtcaaatctaagggttctagcggatcatccaaattgctatgatatacaaggaggaataaa |
14494521 |
T |
|
| Q |
313 |
taatgtttgggggaattact |
332 |
Q |
| |
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|||||||||||||||||||| |
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| T |
14494520 |
taatgtttgggggaattact |
14494501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 332
Target Start/End: Complemental strand, 29211269 - 29211008
Alignment:
| Q |
74 |
acacacttaagggatcatgcaagtatggtacaatttggtggagaaattgtgaattcta-gacaa--gggtcacacacttcaactcaaatgggtagtggcc |
170 |
Q |
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|||||||||| ||| ||||| |||||| |||||||| |||||||| |||||| | | | ||| ||| | ||||| ||||| |||||||||||||| | |
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| T |
29211269 |
acacacttaaaggacagtgcaactatggttcaatttggaggagaaatagtgaatacaatgtcaacaggggctcacacatcaacccaaatgggtagtggac |
29211170 |
T |
|
| Q |
171 |
attttgctggagaaggttttggaaaagcatcatactttaggaatttgcaagttgtggattgggataacaatttgataccattgtcaaatctaagggttct |
270 |
Q |
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||||||||| ||| ||||||| |||||| |||||||||||||| ||||||||||||||| ||||||| ||||| || ||| ||||||| | ||| | |
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| T |
29211169 |
attttgctgaagagggttttgcaaaagctgcatactttaggaatatgcaagttgtggattctgataacagcttgattcccttgccaaatctcaatgttgt |
29211070 |
T |
|
| Q |
271 |
agcggatcatccaaattgctatgatatacaaggaggaataaataatgtttgggggaattact |
332 |
Q |
| |
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||| | | ||||||||| ||| ||||||||| ||| | ||||||| ||||| ||||||| |
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| T |
29211069 |
agctaaccgtccaaattgttataatatacaagaagggactaataatgggtggggaaattact |
29211008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 29255479 - 29255557
Alignment:
| Q |
149 |
tcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcatactttaggaatttgcaagttgtgg |
227 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||| |||| ||||||||| ||||| ||||| ||| |||||||||||| |
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|
| T |
29255479 |
tcaacccaaatgggtagtggacattttgctgaagagggttatggaaaagcttcatattttagaaatatgcaagttgtgg |
29255557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 29248852 - 29248928
Alignment:
| Q |
149 |
tcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcatactttaggaatttgcaagttgt |
225 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || |||| ||||||||| ||||| ||||| ||| |||||||||| |
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| T |
29248852 |
tcaacccaaatgggtagtggacattttgctgaggagggttatggaaaagcttcatattttagaaatatgcaagttgt |
29248928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 29235953 - 29236075
Alignment:
| Q |
107 |
tttggtggagaaattgtgaattctagac---aagggtcacacacttcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcat |
203 |
Q |
| |
|
|||||||||||||| |||||||| | | ||||||| || ||||| || |||||||||||||| |||||||||| || || ||||||||| ||| |
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| T |
29235953 |
tttggtggagaaatagtgaattcaaaatcaaaagggtctcatacttccacccaaatgggtagtggacattttgctgaggagaattatggaaaagctgcat |
29236052 |
T |
|
| Q |
204 |
actttaggaatttgcaagttgtg |
226 |
Q |
| |
|
| |||| |||||||||||||||| |
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|
| T |
29236053 |
attttaagaatttgcaagttgtg |
29236075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 29280686 - 29280808
Alignment:
| Q |
107 |
tttggtggagaaattgtgaattctagac---aagggtcacacacttcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcat |
203 |
Q |
| |
|
|||||||||||||| |||||||| | | ||||||| || ||||| || |||||||||||||| |||||||||| || || ||||||||| ||| |
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|
| T |
29280686 |
tttggtggagaaatagtgaattcaaaatcaaaagggtctcatacttccacccaaatgggtagtggacattttgctgaggagaattatggaaaagctgcat |
29280785 |
T |
|
| Q |
204 |
actttaggaatttgcaagttgtg |
226 |
Q |
| |
|
| |||| |||||||||||||||| |
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|
| T |
29280786 |
attttaagaatttgcaagttgtg |
29280808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 36693505 - 36693562
Alignment:
| Q |
142 |
acacacttcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagca |
199 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||| ||| |||||| ||||| |||||| |
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|
| T |
36693505 |
acacacttcaactcagatgggaagtggtcattttcctgaagaaggatttggcaaagca |
36693562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 30925581 - 30925469
Alignment:
| Q |
149 |
tcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcatactttaggaatttgcaagttgtggattgggataacaatttgatac |
248 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || |||| | |||||| ||||| |||||| || ||||||||||| ||| |||||||| ||||| | |
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|
| T |
30925581 |
tcaacccaaatgggtagtggacattttgctgatgagggttcttcaaaagcttcatattttagggatatgcaagttgtgaattccgataacaagttgattc |
30925482 |
T |
|
| Q |
249 |
cattgtcaaatct |
261 |
Q |
| |
|
||||||||||||| |
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|
| T |
30925481 |
cattgtcaaatct |
30925469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 30916448 - 30916336
Alignment:
| Q |
149 |
tcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcatactttaggaatttgcaagttgtggattgggataacaatttgatac |
248 |
Q |
| |
|
||||| |||||||||||||| |||||||| | || |||||| |||||| ||| ||||||||||| ||||||||| ||| |||||||| ||||| | |
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|
| T |
30916448 |
tcaacccaaatgggtagtggacattttgcagatgagggtttttcaaaagcttcactttttaggaatttacaagttgtgaattctgataacaagttgattc |
30916349 |
T |
|
| Q |
249 |
cattgtcaaatct |
261 |
Q |
| |
|
||||||||||||| |
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|
| T |
30916348 |
cattgtcaaatct |
30916336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 30905745 - 30905633
Alignment:
| Q |
149 |
tcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcatactttaggaatttgcaagttgtggattgggataacaatttgatac |
248 |
Q |
| |
|
||||| |||||||||||||| |||||||| | || ||| | |||||| ||||| |||| |||| ||||||||||| ||| |||||||| ||||| | |
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|
| T |
30905745 |
tcaacccaaatgggtagtggacattttgcagatgagcgttcttcaaaagcttcatattttaagaatatgcaagttgtgaattctgataacaagttgattc |
30905646 |
T |
|
| Q |
249 |
cattgtcaaatct |
261 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30905645 |
cattgtcaaatct |
30905633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 40030399 - 40030504
Alignment:
| Q |
135 |
aagggtcacacacttcaactcaaatgggtagtggccattttgctggagaaggttttggaaaagcatcatactttaggaatttgcaagttgtggattggga |
234 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||| |||||| | | || |||| ||||||||| ||||| ||||| ||| | |||||||| |||| || |
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|
| T |
40030399 |
aagggtctcacacaacaacccaaatgggtagtggacattttccagatgagggttatggaaaagcttcatattttagaaatatacaagttgtagattctga |
40030498 |
T |
|
| Q |
235 |
taacaa |
240 |
Q |
| |
|
|||||| |
|
|
| T |
40030499 |
taacaa |
40030504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 34758199 - 34758160
Alignment:
| Q |
88 |
tcatgcaagtatggtacaatttggtggagaaattgtgaat |
127 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
34758199 |
tcatgcaagcatggtacaatttggtggagagattgtgaat |
34758160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 43727148 - 43727107
Alignment:
| Q |
88 |
tcatgcaagtatggtacaatttggtggagaaattgtgaattc |
129 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
43727148 |
tcatgcaagcatggtacaatttggaggtgaaattgtgaattc |
43727107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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