View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11967_high_31 (Length: 342)
Name: NF11967_high_31
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_high_31 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 376522 - 376832
Alignment:
| Q |
14 |
agaggtagtggtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
376522 |
agaggtagtggtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttg |
376621 |
T |
|
| Q |
114 |
acaattatgtgaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
376622 |
acaattatgtgaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctct |
376721 |
T |
|
| Q |
214 |
tcttcactctattttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgta |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
376722 |
tcttcactctatttttaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgta |
376821 |
T |
|
| Q |
314 |
caacaacaagg |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
376822 |
caacaacaagg |
376832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 324
Target Start/End: Complemental strand, 347964 - 347664
Alignment:
| Q |
24 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| | ||||||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
347964 |
gtgagttcatgggaccttggtttaccaacatgaactatttggttactagtgaccctatgaacgtgcatcacatgatgagcaagtgttttgataattatgt |
347865 |
T |
|
| Q |
124 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
223 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
347864 |
aaagggtcaagaatttcatgagatttttgaagcctttggagatggaatattcaacgctgattcggagaaatggaaatacaataggtctctttttcactct |
347765 |
T |
|
| Q |
224 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaacaacaag |
323 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
347764 |
attttcaaacaaagagattttgaattgtttcaaaagaaaatcattcaaaacaagttggagagaagtttgattcctttgtttgaccatgtacaacaacaag |
347665 |
T |
|
| Q |
324 |
g |
324 |
Q |
| |
|
| |
|
|
| T |
347664 |
g |
347664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 324
Target Start/End: Complemental strand, 356623 - 356323
Alignment:
| Q |
24 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
123 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| || |||||||||| | |||||| ||||||||||||||| |
|
|
| T |
356623 |
gtgagttcatgggaccttggtttaccagcatgaactatttggtcactagtgaccccatcaacttgcatcacatgttaagcaagtcttttgacaattatgt |
356524 |
T |
|
| Q |
124 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
223 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||| |
|
|
| T |
356523 |
taagggtcatgaatatcatgagatatttgaagcctttggagatggaatattcaacactgattcggagacatggaaatacaataggtctctttttcactct |
356424 |
T |
|
| Q |
224 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaacaacaag |
323 |
Q |
| |
|
||||| ||| |||| |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
356423 |
attttgaaaataagagattttgaaatgtttcaaaagaaaatcattcaaaacaagttggagaaaagtttgattcctttgttggaccatgtacaacaacaag |
356324 |
T |
|
| Q |
324 |
g |
324 |
Q |
| |
|
| |
|
|
| T |
356323 |
g |
356323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 336917 - 337046
Alignment:
| Q |
193 |
atggaaatataataggtctcttcttcactctattttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttg |
292 |
Q |
| |
|
||||||||| |||||| |||||| || | | | ||||||||||||||||||||| |||||||||||||||||||| ||||| | |||| | ||| |
|
|
| T |
336917 |
atggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaaaatcattcacaacaaagttgagaaatcattg |
337016 |
T |
|
| Q |
293 |
attcctttgttggaccatgtacaacaacaa |
322 |
Q |
| |
|
|||||||| ||| | ||||| ||||||||| |
|
|
| T |
337017 |
attcctttattgaatcatgttcaacaacaa |
337046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University