View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_high_35 (Length: 332)
Name: NF11967_high_35
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 1807440 - 1807749
Alignment:
| Q |
1 |
agccggaatcttgaccggtggcgtgctcttcgttcttggtatcacaggattgatgcagctggtttacaagttagttcctttatctgttgtgaggggaatt |
100 |
Q |
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| T |
1807440 |
agccggaatcttgaccggtggcgtgctcttcgttcttggtatcacaggattgatgcagctggtgtacaagttagttcctttatctgttgtgaggggaatt |
1807539 |
T |
|
| Q |
101 |
caactagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1807540 |
caactagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggt |
1807639 |
T |
|
| Q |
201 |
ttgggttagatggtttggttctagccattatttgtgcttgttttattgtgattgtgaatggagctggccagaaaaatagcggttgttgcggtgctcccga |
300 |
Q |
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| T |
1807640 |
ttgggttagatggtttggttctagccattgtttgtgcttgttttattgtgattgtgaatggagctggccagaaaaatagcggttgttgcggtgctcccga |
1807739 |
T |
|
| Q |
301 |
tgatggtaat |
310 |
Q |
| |
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||||||||| |
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| T |
1807740 |
agatggtaat |
1807749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 1875129 - 1875346
Alignment:
| Q |
50 |
ttgatgcagctggtttacaagttagttcctttatctgttgtgaggggaattcaactagcacaaggtttgtcatttgctttaacagctgttaaatatgtga |
149 |
Q |
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| T |
1875129 |
ttgatgcagttggtgtacaagtttattcctttatctgttgtgaggggaattcaactagcacaaggtttatcatttgctttaactgctgttaaatatgtga |
1875228 |
T |
|
| Q |
150 |
gaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggtttgggttagatggtttggttctagccattatttgtgcttgttttattgt |
249 |
Q |
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| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||| |||||||| |||||| |||||| ||||| |
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| T |
1875229 |
ggaaaatgcaagatcttccaaagtctaaagctttaggtcaaagaccttggtttggattagatggattggttttagccattgtttgtgtttgtttcattgt |
1875328 |
T |
|
| Q |
250 |
gattgtgaatggagctgg |
267 |
Q |
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||||||||||| ||||| |
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| T |
1875329 |
aattgtgaatggtgctgg |
1875346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 25798768 - 25798506
Alignment:
| Q |
5 |
ggaatcttgaccggtggcgtgctcttcgttcttggtatcacaggattgatgcagctggtttacaagttagttcctttatctgttgtgaggggaattcaac |
104 |
Q |
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|||||||||||||| |||||| | ||| ||||||| ||||||||||||||| |||||| ||||||||| ||||| || ||||||| ||||| ||||||| |
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| T |
25798768 |
ggaatcttgaccggcggcgtgttgttcattcttggcatcacaggattgatgaagctgggttacaagtttattcctctacctgttgtaaggggcattcaac |
25798669 |
T |
|
| Q |
105 |
tagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggtttgg |
204 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| || |||| |||||||| || |
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| T |
25798668 |
tagcacaaggtttgtcatttgctttaactgctgttaaatatgtgaagaaagtgcaagatcttcccaagtctaaagctttgggtgaaaggccttggttagg |
25798569 |
T |
|
| Q |
205 |
gttagatggtttggttctagccattatttgtgcttgttttattgtgattgtgaatggagctgg |
267 |
Q |
| |
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||||||||| ||||||||||| ||| ||||| |||||||||| ||||||| ||||||||||| |
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| T |
25798568 |
gttagatgggttggttctagctattgtttgtacttgttttatattgattgttaatggagctgg |
25798506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 49993838 - 49993732
Alignment:
| Q |
77 |
cctttatctgttgtgaggggaattcaactagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtcta |
176 |
Q |
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||||||| |||||| | || ||||| || |||||||||||||| ||||||||||| ||| |||||||||| |||||||| |||||| | |||||||||| |
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| T |
49993838 |
cctttatgtgttgttcgagggattcagcttgcacaaggtttgtcttttgctttaactgctattaaatatgttagaaaagttcaagatttaccaaagtcta |
49993739 |
T |
|
| Q |
177 |
aatcttt |
183 |
Q |
| |
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||||||| |
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| T |
49993738 |
aatcttt |
49993732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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