View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11967_high_39 (Length: 309)

Name: NF11967_high_39
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11967_high_39
NF11967_high_39
[»] chr1 (2 HSPs)
chr1 (183-297)||(39367135-39367249)
chr1 (222-297)||(12190688-12190762)
[»] chr2 (2 HSPs)
chr2 (205-283)||(27150272-27150350)
chr2 (247-297)||(7703425-7703475)
[»] chr4 (2 HSPs)
chr4 (211-297)||(24558121-24558205)
chr4 (183-232)||(24558071-24558121)
[»] chr5 (1 HSPs)
chr5 (229-277)||(31571741-31571789)
[»] chr6 (1 HSPs)
chr6 (214-277)||(24631335-24631398)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 183 - 297
Target Start/End: Original strand, 39367135 - 39367249
Alignment:
Q  183 gtggctcacaatgagtttgtcttttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgt 282  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |||||||||| || ||||    
T  39367135 gtggctcgcaatgagtttgttttttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaaaaaatgtttaacatgattcttgtgt 39367234  T
Q  283 tttcctgttcatctc 297  Q
    | |||||||||||||    
T  39367235 tgtcctgttcatctc 39367249  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 12190762 - 12190688
Alignment:
Q  222 taggaagtcttatgagtgagtgttgttattgttgaacaaga-aattaacatgatcctcgtgttttcctgttcatctc 297  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||| ||||  |||| |||||||||||||    
T  12190762 taggaagtcttatgagtgagtgttgttattgttgaacaagagttttaacatgttcct--tgttatcctgttcatctc 12190688  T

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Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 27150272 - 27150350
Alignment:
Q  205 tttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgtt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  27150272 tttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagagtttaacatgatccttgtgtt 27150350  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 7703475 - 7703425
Alignment:
Q  247 ttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctc 297  Q
    ||||||||||||||||  ||||||||||||| ||||| |||||||||||||    
T  7703475 ttattgttgaacaagagtttaacatgatccttgtgttgtcctgttcatctc 7703425  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 24558121 - 24558205
Alignment:
Q  211 ttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||  |||| || ||||||||||    
T  24558121 ttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagagcttaacacgatcct--tgttgtcttgttcatctc 24558205  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 24558071 - 24558121
Alignment:
Q  183 gtggctcacaatgagtttgtcttt-tgagttattaatgtgtaggaagtctt 232  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  24558071 gtggctctcaatgagtttgtctttctgagttattaatgtgtaggaagtctt 24558121  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 31571789 - 31571741
Alignment:
Q  229 tcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 277  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  31571789 tcttatgagtgagtgttgttattgttgaacaagagtttaacatgatcct 31571741  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 24631335 - 24631398
Alignment:
Q  214 ttaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 277  Q
    ||||| ||||| || ||||||||||||| |||||| |||||||||||||  |||| ||||||||    
T  24631335 ttaatttgtagaaaatcttatgagtgagagttgttcttgttgaacaagagtttaatatgatcct 24631398  T

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