View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_high_45 (Length: 244)
Name: NF11967_high_45
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_high_45 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 47477372 - 47477619
Alignment:
| Q |
1 |
gatgcccataccaccgccacttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaat |
100 |
Q |
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| T |
47477372 |
gatgcccataccaccgccacttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaat |
47477471 |
T |
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| Q |
101 |
aatgaaaagaaagnnnnnnnnnngctcaaattggcataa----caattgcggtattaaatttagaacataaaagaaattcttggcannnnnnnnaatgat |
196 |
Q |
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| T |
47477472 |
aatgaaaagaaagaaaaaaaaaagctcaaattggcataagtttcaattgcggtattaaatttagaacataaaagaaattcttggcattttttttaatgat |
47477571 |
T |
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| Q |
197 |
aaatgttactaattagttagttgtgagattactatttactcgtctgtc |
244 |
Q |
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| T |
47477572 |
aaatgttactagttagttagttgtgagattactatttactcgtctgtc |
47477619 |
T |
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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 47474069 - 47474149
Alignment:
| Q |
20 |
cttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaat |
100 |
Q |
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| T |
47474069 |
cttctagatataccaaattttgtagccaactggatcttttctctgggcaattgctttaatgcctagtcaacaaaatcaaat |
47474149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 47486684 - 47486767
Alignment:
| Q |
20 |
cttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaataat |
103 |
Q |
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||||||| |||||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||||| |
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| T |
47486684 |
cttctggctataccgaattttgtagccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataat |
47486767 |
T |
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