View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11967_high_49 (Length: 237)

Name: NF11967_high_49
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11967_high_49
NF11967_high_49
[»] chr5 (5 HSPs)
chr5 (7-223)||(18600010-18600221)
chr5 (180-221)||(39542396-39542437)
chr5 (174-221)||(36161024-36161071)
chr5 (166-218)||(3193627-3193679)
chr5 (185-221)||(7887289-7887325)
[»] chr7 (6 HSPs)
chr7 (166-223)||(30095860-30095917)
chr7 (166-218)||(15134556-15134608)
chr7 (166-221)||(33480592-33480647)
chr7 (169-211)||(35812589-35812631)
chr7 (185-221)||(21292832-21292868)
chr7 (177-221)||(49164868-49164912)
[»] chr4 (4 HSPs)
chr4 (166-221)||(23870019-23870074)
chr4 (169-221)||(29118446-29118498)
chr4 (166-221)||(2113811-2113866)
chr4 (178-221)||(7540515-7540558)
[»] chr6 (5 HSPs)
chr6 (180-222)||(13481669-13481711)
chr6 (146-221)||(10668980-10669055)
chr6 (185-222)||(33344787-33344824)
chr6 (147-220)||(34969349-34969422)
chr6 (185-222)||(35122052-35122089)
[»] chr2 (2 HSPs)
chr2 (185-221)||(5163783-5163819)
chr2 (167-210)||(16647947-16647990)
[»] chr8 (1 HSPs)
chr8 (180-222)||(9191186-9191228)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 18600010 - 18600221
Alignment:
Q  7 aaaataaaattttacaaaaccacctttgtcataattgttgtttccatcactgcgttgtctgtaaaagcacaagaaatgaaatactagannnnnnnacagc 106  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||     |||||||||| |       |||||    
T  18600010 aaaataaaattttaaaaaaccgcctttgtcataattgttgttttcatcactgcgttgtttgtaaaagcaca-----tgaaatactatatttttttacagc 18600104  T
Q  107 aaaatactttaaatcatgaagatcagggaaggccctcaaggtgggcgggagaggcggtggcccagggcatcaattttataggggcatcaaaattattatt 206  Q
    |||||||| |||||||||||||||||||   ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18600105 aaaatactataaatcatgaagatcaggggtagccctgagggtgggcgggagaggcggtggcccagggcaccaattttataggggcatcaaaattattatt 18600204  T
Q  207 tttacgtagtagttatt 223  Q
    ||||  |||||||||||    
T  18600205 tttatatagtagttatt 18600221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 39542396 - 39542437
Alignment:
Q  180 ttttataggggcatcaaaattattatttttacgtagtagtta 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  39542396 ttttacaggggcatcaaaattattatttttacgtagtagtta 39542437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 36161024 - 36161071
Alignment:
Q  174 catcaattttataggggcatcaaaattattatttttacgtagtagtta 221  Q
    ||||| ||||||||||| ||||||||||||||||||| ||||||||||    
T  36161024 catcatttttataggggtatcaaaattattatttttatgtagtagtta 36161071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 3193679 - 3193627
Alignment:
Q  166 gcccagggcatcaattttataggggcatcaaaattattatttttacgtagtag 218  Q
    |||||||||| || ||| ||| ||||| ||||||||||||||||| |||||||    
T  3193679 gcccagggcaccattttcataagggcaccaaaattattatttttatgtagtag 3193627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 7887325 - 7887289
Alignment:
Q  185 taggggcatcaaaattattatttttacgtagtagtta 221  Q
    |||||||| |||||||||||||||||| |||||||||    
T  7887325 taggggcaccaaaattattatttttacttagtagtta 7887289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 30095917 - 30095860
Alignment:
Q  166 gcccagggcatcaattttataggggcatcaaaattattatttttacgtagtagttatt 223  Q
    |||||||||| || |||| |||||||| |||||||||||||||||| |||||||||||    
T  30095917 gcccagggcaccatttttttaggggcaccaaaattattatttttacttagtagttatt 30095860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 15134608 - 15134556
Alignment:
Q  166 gcccagggcatcaattttataggggcatcaaaattattatttttacgtagtag 218  Q
    |||||||||||||| ||| |||||||| |||||||||||||||||| ||||||    
T  15134608 gcccagggcatcaaatttttaggggcaccaaaattattatttttacttagtag 15134556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 33480647 - 33480592
Alignment:
Q  166 gcccagggcatcaattttataggggcatcaaaattattatttttacgtagtagtta 221  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||||    
T  33480647 gcccaggacatcatttttataggggcaccaaaattattatttttatgtaatagtta 33480592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 35812589 - 35812631
Alignment:
Q  169 cagggcatcaattttataggggcatcaaaattattatttttac 211  Q
    ||||||| || |||| |||||||||||||||||||||||||||    
T  35812589 cagggcaccatttttttaggggcatcaaaattattatttttac 35812631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 21292868 - 21292832
Alignment:
Q  185 taggggcatcaaaattattatttttacgtagtagtta 221  Q
    |||||||| |||||||||||||||||| |||||||||    
T  21292868 taggggcaccaaaattattatttttacttagtagtta 21292832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 49164912 - 49164868
Alignment:
Q  177 caattttataggggcatcaaaattattatttttacgtagtagtta 221  Q
    ||||||| || |||||||| ||||||||||||||| |||||||||    
T  49164912 caattttttaagggcatcataattattatttttacttagtagtta 49164868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 23870019 - 23870074
Alignment:
Q  166 gcccagggcatcaattttataggggcatcaaaattattatttttacgtagtagtta 221  Q
    |||||||||| || |||| |||||||| |||||||||||||||||| |||||||||    
T  23870019 gcccagggcaccacttttttaggggcaccaaaattattatttttacttagtagtta 23870074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 29118446 - 29118498
Alignment:
Q  169 cagggcatcaattttataggggcatcaaaattattatttttacgtagtagtta 221  Q
    ||||||| || |||||| |||||| ||||||||||||||||| ||||||||||    
T  29118446 cagggcaccatttttattggggcaccaaaattattatttttatgtagtagtta 29118498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 2113811 - 2113866
Alignment:
Q  166 gcccagggcatcaattttataggggcatcaaaattattatttttacgtagtagtta 221  Q
    |||||||||| || ||| ||||||||| |||||||||||| |||| ||||||||||    
T  2113811 gcccagggcaccattttcataggggcaccaaaattattatctttatgtagtagtta 2113866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 7540558 - 7540515
Alignment:
Q  178 aattttataggggcatcaaaattattatttttacgtagtagtta 221  Q
    |||||| ||||||||||||||||||||||||||| || ||||||    
T  7540558 aattttttaggggcatcaaaattattatttttacttattagtta 7540515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 13481711 - 13481669
Alignment:
Q  180 ttttataggggcatcaaaattattatttttacgtagtagttat 222  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  13481711 ttttttaggggcatcaaaattattatttttccgtagtagttat 13481669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 10669055 - 10668980
Alignment:
Q  146 ggtgggcgggagaggcggtggcccagggcatcaattttataggggcatcaaaattattatttttacgtagtagtta 221  Q
    |||||||||||| ||| |  | |||||||| || |||| |||||||| |||||||||||||||||| || ||||||    
T  10669055 ggtgggcgggaggggcagcagtccagggcaccatttttttaggggcaccaaaattattatttttacttattagtta 10668980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 33344787 - 33344824
Alignment:
Q  185 taggggcatcaaaattattatttttacgtagtagttat 222  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  33344787 taggggcaccaaaattattatttttacttagtagttat 33344824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 34969349 - 34969422
Alignment:
Q  147 gtgggcgggagaggcggtggcccagggcatcaattttataggggcatcaaaattattatttttacgtagtagtt 220  Q
    ||||||||||| ||| ||| ||||  |||  | |||| || |||||||||||||||||||||||| ||||||||    
T  34969349 gtgggcgggaggggcagtgacccatagcactatttttttaagggcatcaaaattattatttttacttagtagtt 34969422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 35122089 - 35122052
Alignment:
Q  185 taggggcatcaaaattattatttttacgtagtagttat 222  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  35122089 taggggcaccaaaattattatttttacttagtagttat 35122052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 5163783 - 5163819
Alignment:
Q  185 taggggcatcaaaattattatttttacgtagtagtta 221  Q
    ||||||||||||||||||||||||||| |||||||||    
T  5163783 taggggcatcaaaattattatttttacttagtagtta 5163819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 16647990 - 16647947
Alignment:
Q  167 cccagggcatcaattttataggggcatcaaaattattattttta 210  Q
    ||||||||| || |||| ||||||||||||||||||||||||||    
T  16647990 cccagggcaccatttttttaggggcatcaaaattattattttta 16647947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 9191186 - 9191228
Alignment:
Q  180 ttttataggggcatcaaaattattatttttacgtagtagttat 222  Q
    |||| |||| |||||||||||||||||||||| ||||||||||    
T  9191186 ttttttaggagcatcaaaattattatttttacttagtagttat 9191228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University