View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_high_53 (Length: 210)
Name: NF11967_high_53
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 44850677 - 44850510
Alignment:
| Q |
1 |
ttctatgagtaattgtccttatatcaagacatggcttcaatttagcatatatattaactgtgtatttgaaacagtttgttttgtatttttctgacccagc |
100 |
Q |
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| T |
44850677 |
ttctatgagtaattgtccttatatcaagacatggcttcaatttagcatatatattaactgtgtatttgaaacagtttgtttcgtatttttctgacccagc |
44850578 |
T |
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| Q |
101 |
ttgtattagtattgtgtataagctgaatgaatcagtttgttttgtatt---tgagtcacattaagaaa |
165 |
Q |
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| T |
44850577 |
ttgtattagtattgtgtataagctgaatgaatcagtttgttttgtatttgatgagtcacattaagaaa |
44850510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 44850816 - 44850848
Alignment:
| Q |
163 |
aaatggttttgataaaaaatagtgggtttaatt |
195 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44850816 |
aaatggttttgataaaaaatagtgggtttaatt |
44850848 |
T |
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