View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11967_low_10 (Length: 498)
Name: NF11967_low_10
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_10 |
 | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Original strand, 4655102 - 4655567
Alignment:
| Q |
17 |
gaatgacataaagttgagttaatgggcggatatttttaatttctatgaatgttcggtttttcttccctcgctaggcacacaaaacatcgcatagcgaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4655102 |
gaatgacataaagttgagttaatgggcggacatttttaatttctatgaatgttcggtttttcttccctcgctaggcacacaaaacatcgcttagcgaatt |
4655201 |
T |
|
| Q |
117 |
gaagcaaaaaattaacttttgnnnnnnnnn-ttagatttgctaggcaaacatgtccttgcatagtgaagtcaagctccattttagagtcagaatccctct |
215 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4655202 |
gaagcaaaaaattaactttcgaaaaaaaaaattagattcgctaggcaaacatgtccttgcataccgaagtcaagctccattttagagtcagaatccctct |
4655301 |
T |
|
| Q |
216 |
ctattaggtttgattttagagtttcaaaacccttacaaatagaggtgcaggttatcatttgaagtcaagcttgcctagcaaatcaaggtttcttcaaagg |
315 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4655302 |
ctattaggtttggttttagaatttcagaacccttacaaatagaggtgcaggttatcatttgaagtcaagcttgcctagcaaatcaaggtttcttcaaagg |
4655401 |
T |
|
| Q |
316 |
agggaaaagccaacagtctttagatattttcttgaaccgccttagttggcttagcggaccaaatttctcctagcaaatcatatttggcttttccttttgg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4655402 |
agggaaaagccaacagtctttagatattttcttgaaccgccttagttcacttagcggatccaattttgcctagcaaatcatatttggcttttccttttgg |
4655501 |
T |
|
| Q |
416 |
aactcattgttttggctcgctttcaccatgcatgtcaagctcgcctagagatcgtgcttttcaccatatg |
485 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4655502 |
aactcattgttttggctcgctttcac----catgtcaagctcgcctagagatcgtgtttttcaccatatg |
4655567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 370
Target Start/End: Original strand, 8718361 - 8718446
Alignment:
| Q |
285 |
cttgcctagcaaatcaaggtttcttcaaaggagggaaaagccaacagtctttagatattttcttg-aaccgccttagttggcttagc |
370 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| ||| | |||||| | | ||||||| ||||||||||||| ||||||| |
|
|
| T |
8718361 |
cttgcctagcaaatcaagctttcttcattggagggaaaatccagccatctttaaaca-tttcttgaaaccgccttagtttgcttagc |
8718446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 277 - 445
Target Start/End: Original strand, 12830945 - 12831113
Alignment:
| Q |
277 |
aagtcaagcttgcctagcaaatcaaggtttcttcaaaggagggaaaagccaacagtctttagatattttcttgaaccgccttagttggcttagcggacca |
376 |
Q |
| |
|
|||||||||| |||| ||||||| || |||||||||||||||||||| ||| | ||| |||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
12830945 |
aagtcaagctcgcctcgcaaatcgagttttcttcaaaggagggaaaaaccagttgacttcagatattttcttgaaccgatttagttctcttaacggacca |
12831044 |
T |
|
| Q |
377 |
aatttctcctagcaaatcatatttggcttttccttttggaactcattgttttggctcgctttcaccatg |
445 |
Q |
| |
|
||| || |||||| || | | ||||||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
12831045 |
aatctcgcctagcgaaatgtctctggcttttccttttggaactctctgttttggattgctttcaccatg |
12831113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 3063 - 2971
Alignment:
| Q |
286 |
ttgcctagcaaatcaaggtttcttcaaaggagggaaaagccaacagtctttagatatttt--cttgaaccgccttagttggcttagcggacca |
376 |
Q |
| |
|
||||||||| |||| ||||| ||||| || |||||||| |||| ||||| ||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
3063 |
ttgcctagcgaatcgaggttacttcagagaagggaaaaaccaattgtcttcagatatttttccttgaaccgccttagctcgcttagcggacca |
2971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 25034779 - 25034675
Alignment:
| Q |
338 |
gatattttcttgaaccgccttagttggcttagcggaccaaatttctcctagcaaatcatatttggcttttccttttggaactcattgttttggctcgctt |
437 |
Q |
| |
|
||||||||| | |||| |||||||| ||||||| ||||| || || | || |||| || |||||||||||||| | |||||| |||||||||| ||||| |
|
|
| T |
25034779 |
gatattttcataaaccaccttagttcgcttagcagaccacatctcgcttatcaaaccacctttggcttttccttctagaactctttgttttggcccgctt |
25034680 |
T |
|
| Q |
438 |
tcacc |
442 |
Q |
| |
|
||||| |
|
|
| T |
25034679 |
tcacc |
25034675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 411
Target Start/End: Original strand, 798963 - 799043
Alignment:
| Q |
331 |
gtctttagatattttcttgaaccgccttagttggcttagcggaccaaatttctcctagcaaatcatatttggcttttcctt |
411 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | ||| ||||||||| || ||||||||| | |||||||||||||| |
|
|
| T |
798963 |
gtcttcagatattttcttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttcctt |
799043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 485
Target Start/End: Original strand, 22182189 - 22182272
Alignment:
| Q |
399 |
ttggcttttccttttggaactcattgttttggctcgctttcaccatgcatgtcaagctcgcctag-agatcgtgcttttcaccatatg |
485 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||||||||||||||| |||||||| |||| | |||||| ||||||||||||| |
|
|
| T |
22182189 |
ttggcttttccttctggaactctctgtttttgctcgctttcaccatgc----caagctcgtctagcaaatcgtgtttttcaccatatg |
22182272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 11142924 - 11142880
Alignment:
| Q |
402 |
gcttttccttttggaactcattgttttggctcgctttcaccatgc |
446 |
Q |
| |
|
||||||||||||||| ||| |||||||| || ||||||||||||| |
|
|
| T |
11142924 |
gcttttccttttggatctctttgttttgacttgctttcaccatgc |
11142880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 390
Target Start/End: Complemental strand, 27130587 - 27130472
Alignment:
| Q |
276 |
gaagtcaagcttgcctagcaaatcaaggtttcttcaaaggagggaaaagccaacagtctttagatattttcttgaaccgccttagtt-ggcttagcggac |
374 |
Q |
| |
|
||||||||| ||||||||| ||| | ||||| ||||| ||| ||| |||| ||||| ||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
27130587 |
gaagtcaagtttgcctagcgaattgatgtttcatcaaaagagaataaaaccaattgtcttcagatattttgttgaatcgccttagttcggcttagcggac |
27130488 |
T |
|
| Q |
375 |
caaatttctcctagca |
390 |
Q |
| |
|
|||| |||| ||||| |
|
|
| T |
27130487 |
taaatctctcttagca |
27130472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University