View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_11 (Length: 497)
Name: NF11967_low_11
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 495
Target Start/End: Complemental strand, 33992996 - 33992510
Alignment:
| Q |
9 |
agcataggtgataagatatgaattcataatgattattaattaaagcaagattttcatacgctgccctggatcgcaattgtatttgtgacatcaaggtttt |
108 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992996 |
agcataggtgataagatatgaatacataatgattattaattaaagcaagattttcatacgctgccctggatcgcaattgtatttgtgacatcaaggtttt |
33992897 |
T |
|
| Q |
109 |
tgatgtctataatacaattgcgattgaggtagtatcgatgatatttgatcacgattctttgcaatatcaaaattgcgactgcgatttaaacgattgagga |
208 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33992896 |
tgatgtctataatacaattgcgattgaggtagcatcgatgatatttgatcacgattctttgcaatatcaaaattgtgactgcgatttaaacgattgagga |
33992797 |
T |
|
| Q |
209 |
acaattgacttaccagaataccatttgcaaacctgactaggacagtcataacaagggcataagcagctaattcggttgaaccaatatgaccaatgaagga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992796 |
acaattgacttaccagaataccatttgcaaacctgactaggacagtcataacaagggcataagcagctaattcggttgaaccaatatgaccaatgaagga |
33992697 |
T |
|
| Q |
309 |
ttgagcaactaccatgataccaaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttcctt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992696 |
ttgagcaactaccatgataccaaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttcctt |
33992597 |
T |
|
| Q |
409 |
agtgactcttcatcctcctctgaagggttttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttctact |
495 |
Q |
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| T |
33992596 |
agggactcttcatcctcctctgaagggttttgatgctgtaaaaggttcttgtttagctcttctgatcccatttccacttcttctact |
33992510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 212 - 493
Target Start/End: Complemental strand, 33983035 - 33982754
Alignment:
| Q |
212 |
attgacttaccagaataccatttgcaaacctgactaggacagtcataacaagggcataagcagctaattcggttgaaccaatatgaccaatgaaggattg |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||||| | ||||||||||||||| |
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| T |
33983035 |
attgacttaccagaataccatttgcaaatctgactaggacagtcataacaagggaataggcagctaactcggttgaaccaatgtaaccaatgaaggattg |
33982936 |
T |
|
| Q |
312 |
agcaactaccatgataccaaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagt |
411 |
Q |
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|| ||||| ||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||| |||||| |||||||||||| |
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| T |
33982935 |
agtaactatcatgataccaaatgttgaaaacctagtgaacatggcagggcctgctactatccacaacttcttgctttctttccatactcttttccttagt |
33982836 |
T |
|
| Q |
412 |
gactcttcatcctcctctgaagggttttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttcta |
493 |
Q |
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| T |
33982835 |
ggctcttcttcctcctctgaagtattttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttcta |
33982754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 33993054 - 33992995
Alignment:
| Q |
80 |
cgcaattgtatttgtgacatcaaggtttttgatgtctataatacaattgcgattgaggtag |
140 |
Q |
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| T |
33993054 |
cgcaattgtacttgtgacat-atggtttttgatatctataatactattgcgattgaggtag |
33992995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 418
Target Start/End: Original strand, 9219437 - 9219525
Alignment:
| Q |
330 |
aaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgactctt |
418 |
Q |
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|||||||||||| | ||||||| ||||| ||||| |||| ||| | |||||||||||||||||||||||||||||||||||| |||| |
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| T |
9219437 |
aaatgttgaaaattttgtgaatattgcaggccctgccactacccaaatcttcttgctttcttcccatacccttttccttagtgattctt |
9219525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 9240524 - 9240596
Alignment:
| Q |
347 |
tgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgactcttc |
419 |
Q |
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||||||| ||||| ||||||||| |||| | ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
9240524 |
tgaatattgcaggccctgctactctccaaatcttcttgctttcttcccataccctttttcttagtgattcttc |
9240596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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