View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11967_low_13 (Length: 477)

Name: NF11967_low_13
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11967_low_13
NF11967_low_13
[»] chr1 (4 HSPs)
chr1 (20-342)||(31315356-31315680)
chr1 (81-331)||(31316260-31316509)
chr1 (382-459)||(31315265-31315342)
chr1 (73-167)||(42879660-42879754)
[»] chr6 (5 HSPs)
chr6 (33-123)||(17865826-17865918)
chr6 (187-302)||(22791221-22791338)
chr6 (235-302)||(29410984-29411051)
chr6 (74-144)||(32983469-32983539)
chr6 (74-123)||(29411180-29411229)
[»] chr7 (2 HSPs)
chr7 (204-298)||(21571061-21571155)
chr7 (28-112)||(13826846-13826933)
[»] chr5 (4 HSPs)
chr5 (202-302)||(17460748-17460847)
chr5 (77-167)||(34234459-34234549)
chr5 (72-144)||(18924586-18924658)
chr5 (71-122)||(25942211-25942262)
[»] chr4 (4 HSPs)
chr4 (202-302)||(32671352-32671452)
chr4 (74-123)||(11422474-11422523)
chr4 (72-144)||(29895976-29896048)
chr4 (89-167)||(32671230-32671308)
[»] scaffold0735 (1 HSPs)
scaffold0735 (73-167)||(3286-3380)
[»] chr8 (3 HSPs)
chr8 (74-167)||(32134884-32134978)
chr8 (74-119)||(25115407-25115452)
chr8 (253-326)||(26025964-26026037)
[»] chr2 (3 HSPs)
chr2 (74-144)||(25424364-25424434)
chr2 (74-167)||(27155862-27155955)
chr2 (74-122)||(21546909-21546957)
[»] chr3 (4 HSPs)
chr3 (72-144)||(2874191-2874263)
chr3 (74-119)||(14309216-14309261)
chr3 (74-144)||(34056969-34057039)
chr3 (202-317)||(2874008-2874123)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 31315680 - 31315356
Alignment:
20 ttattaaacaaaaattgtcaaaaggatatggtttgtctccatcaaagggaaaattgtgaagaagattttcttcttagacttggttgggttttgatgataa 119  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||    
31315680 ttattaaacaaaaattgtcaaaaggatatggtttttctccatcaaagggaaaattgtgaagaagatttccttcttggacttggttaggttttgatgataa 31315581  T
120 caaagattcatcataaaagaagaaatatatgtaggcacaagatgaagacactagaattgtatagttaaataattttaagtat--tctttatatttgattt 217  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||  ||||||||||||||||    
31315580 caaagattcatcataaaagaagaaatatatgtagacacaagatgaagacacttgaattgtgtagttaaataatttgaagtatggtctttatatttgattt 31315481  T
218 atcattttcaacatttttataactcataatgcttggaaattcattggaacataatcacaaatcattttcttagttaaatataagattatatgtgaaacaa 317  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
31315480 atcattttcaatatttttataactcataatgcttggaaattcattggaacataatcacaaatcattttcttagttaaatataagattatatgtgaagcaa 31315381  T
318 gctcttaaattgatgacaaactaat 342  Q
    |||||||||||||||||||||||||    
31315380 gctcttaaattgatgacaaactaat 31315356  T

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Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 81 - 331
Target Start/End: Complemental strand, 31316509 - 31316260
Alignment:
81 aagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaatatatgtaggcacaagatgaagacactagaattgta 180  Q
    |||||||||||||||||||||||||  ||||||||||||||||   |||||| ||||||||||| |||||||||||||||||||||| ||| | ||||||    
31316509 aagattttcttcttagacttggttgaattttgatgataacaaatgctcatcacaaaagaagaaaaatatgtaggcacaagatgaagaaacttggattgta 31316410  T
181 tagttaaataattttaagtat--tctttatatttgatttatcattttcaacatttttataactcataatgcttggaaattcattggaacataatcacaaa 278  Q
    ||||||||||||| |||||||  ||||| | ||||||||| ||||||||||||   ||||||| |||||      ||| |||||| || ||||| |||||    
31316409 tagttaaataattgtaagtatggtctttttctttgatttaccattttcaacatccatataact-ataat--aaaaaaaatcattgaaatataataacaaa 31316313  T
279 tcattttcttagttaaatataagattatatgtgaaacaagctcttaaattgat 331  Q
    ||||||| | |||||||||||||| | ||||||||| ||||||||||||||||    
31316312 tcattttatgagttaaatataagagtctatgtgaaataagctcttaaattgat 31316260  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 31315342 - 31315265
Alignment:
382 cgattacatgttcgatttttgaaaacatttttgaatgttacaacatgtaatcagttaccaaaacgaagtaacccaata 459  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
31315342 cgattacatgttctatttttgaaaacatttttgaatgttacaacatgtaatcaattaccaaaacgaagtaacccaata 31315265  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 42879660 - 42879754
Alignment:
73 ttgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaatatatgtaggcacaagatgaaga 167  Q
    ||||||||||||||  ||||||||| ||||||||||||||| |||||||||    ||||| |||||||||||   ||| ||||||||||||||||    
42879660 ttgtgaagaagattcccttcttagatttggttgggttttgacgataacaaactcacatcacaaaagaagaaaaccatgaaggcacaagatgaaga 42879754  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 17865826 - 17865918
Alignment:
33 attgtcaaaaggatatggtttgtctccatcaaa--gggaaaattgtgaagaagattttcttcttagacttggttgggttttgatgataacaaa 123  Q
    ||||||||||||||||||||||||  |||||||  ||| | |||||||||||||||| |||||||||||||||| ||||||||||||||||||    
17865826 attgtcaaaaggatatggtttgtcatcatcaaaagggggatattgtgaagaagatttccttcttagacttggtttggttttgatgataacaaa 17865918  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 22791221 - 22791338
Alignment:
187 aataattttaagtat--tctttatatttgatttatcattttcaacatttttataactcataatgcttggaaattcattggaacataatcacaaatcattt 284  Q
    ||||||| |||||||  ||||||| |||||||||||  ||||||||| | ||||||| | ||||||   ||||||||| |||| ||||||||||||||||    
22791221 aataattgtaagtatgatctttatctttgatttatcgctttcaacatctatataacttagaatgctcaaaaattcatttgaacttaatcacaaatcattt 22791320  T
285 tcttagttaaatataaga 302  Q
    | | | ||||||||||||    
22791321 tttaaattaaatataaga 22791338  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 29411051 - 29410984
Alignment:
235 tataactcataatgcttggaaattcattggaacataatcacaaatcattttcttagttaaatataaga 302  Q
    ||||||| | ||||||  |||||||||| |||| |||||||||||||||| || ||| ||||||||||    
29411051 tataacttagaatgctcagaaattcatttgaacttaatcacaaatcatttgctaagtcaaatataaga 29410984  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 32983469 - 32983539
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaa 144  Q
    |||||||||||||| |||||||||||||  ||  ||||||||||||||||  | ||| | |||||||||||    
32983469 tgtgaagaagatttccttcttagacttgactgaattttgatgataacaaacttacataacaaaagaagaaa 32983539  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 29411229 - 29411180
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataacaaa 123  Q
    ||||||||||||||  |||||| |||||| | ||||||||||||||||||    
29411229 tgtgaagaagatttctttcttaaacttggctaggttttgatgataacaaa 29411180  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 21571155 - 21571061
Alignment:
204 tttatatttgatttatcattttcaacatttttataactcataatgcttggaaattcattggaacataatcacaaatcattttcttagttaaatat 298  Q
    ||||| ||||||||| || ||||||||||| ||||||| | ||||||  |||||||||| |||| ||||||||||||||||||| ||||||||||    
21571155 tttatctttgatttaccactttcaacatttatataacttagaatgctcagaaattcatttgaacttaatcacaaatcattttctaagttaaatat 21571061  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 13826846 - 13826933
Alignment:
28 caaaaattgtcaaaaggatatggtttgtctccatcaaa--gggaaa-attgtgaagaagattttcttcttagacttggttgggttttg 112  Q
    |||| |||||||||||||||  |||||||  |||||||  |||| | |||||||||||||||| |||||||||||| | |||||||||    
13826846 caaacattgtcaaaaggataaagtttgtcatcatcaaaaagggagagattgtgaagaagatttccttcttagacttagctgggttttg 13826933  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 17460847 - 17460748
Alignment:
202 tctttatatttgatttatcattttcaacatttttataactcataatgcttggaaattcattggaacataatcacaaatcattttcttagttaaatataag 301  Q
    |||||||||| ||||||||| ||||||||| | ||||||| | ||||||  |||||||||| |||| |||||| || ||||||||| |||||||||||||    
17460847 tctttatatt-gatttatcactttcaacatctatataacttagaatgctcagaaattcatttgaacttaatcataattcattttctaagttaaatataag 17460749  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 34234459 - 34234549
Alignment:
77 gaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaatatatgtaggcacaagatgaaga 167  Q
    |||||||||||  ||||||||||||| || |||||||||||||||||    ||||| |||||||||||  |||| ||||||||||||||||    
34234459 gaagaagatttctttcttagacttggctgagttttgatgataacaaactcacatcacaaaagaagaaaactatggaggcacaagatgaaga 34234549  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 18924586 - 18924658
Alignment:
72 attgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaa 144  Q
    ||||||||||||||||||||||||||||||  ||  ||||||||||||||||    ||||| |||||||||||    
18924586 attgtgaagaagattttcttcttagacttgactgaattttgatgataacaaactcacatcacaaaagaagaaa 18924658  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 25942211 - 25942262
Alignment:
71 aattgtgaagaagattttcttcttagacttggttgggttttgatgataacaa 122  Q
    ||||||||||||||||| |||||||||||||| | |||||||| ||||||||    
25942211 aattgtgaagaagatttccttcttagacttggctaggttttgacgataacaa 25942262  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 32671352 - 32671452
Alignment:
202 tctttatatttgatttatcattttcaacatttttataactcataatgcttggaaattcattggaacataatcacaaatcattttcttagttaaatataag 301  Q
    ||||||| |||||||||| | ||||||||| | ||||||| | ||||||  |||||||||| |||| | ||||||||||||||||| ||| |||||||||    
32671352 tctttatctttgatttattactttcaacatctatataacttagaatgctcagaaattcatttgaactttatcacaaatcattttctaagtaaaatataag 32671451  T
302 a 302  Q
    |    
32671452 a 32671452  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 11422523 - 11422474
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataacaaa 123  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||||||||    
11422523 tgtgaagaagatttgcttcctagacttggttgggttttgataataacaaa 11422474  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 29895976 - 29896048
Alignment:
72 attgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaa 144  Q
    |||||||||||||||| ||||||| | |||| ||||||| ||||||||||||    ||||| |||||||||||    
29895976 attgtgaagaagatttccttcttaaatttggctgggtttcgatgataacaaactcacatcacaaaagaagaaa 29896048  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 32671230 - 32671308
Alignment:
89 cttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaatatatgtaggcacaagatgaaga 167  Q
    |||||||||||||  ||||||||||||||||||||    ||||| ||||||| | |  |||| ||||||||||||||||    
32671230 cttcttagacttgactgggttttgatgataacaaattcacatcacaaaagaaaataattatggaggcacaagatgaaga 32671308  T

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Target: scaffold0735 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 3380 - 3286
Alignment:
73 ttgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaatatatgtaggcacaagatgaaga 167  Q
    ||||||||||||||  ||||||||| ||||||||||||||| |||||||||    ||||| |||||||||||   ||| ||||||||||||||||    
3380 ttgtgaagaagattcccttcttagatttggttgggttttgacgataacaaactcacatcacaaaagaagaaaaccatgaaggcacaagatgaaga 3286  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 32134884 - 32134978
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaag-aaatatatgtaggcacaagatgaaga 167  Q
    ||||||||| |||||||||||| || |||||| |||||||||||||||||    |||||||||||||| |||| |||| |||||| |||||||||    
32134884 tgtgaagaatattttcttcttaaacatggttgagttttgatgataacaaactcacatcataaaagaagaaaatctatggaggcacgagatgaaga 32134978  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 25115452 - 25115407
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataa 119  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||    
25115452 tgtgaagaatatttccttcttagacttggttgagttttgatgataa 25115407  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 26026037 - 26025964
Alignment:
253 gaaattcattggaacataatcacaaatcattttcttagttaaatataagattatatgtgaaacaagctcttaaa 326  Q
    |||||||||| |||| ||||||||||||||||| | | |||||||||| | | |||| ||||||| || |||||    
26026037 gaaattcatttgaacttaatcacaaatcattttttaaattaaatataaaagtctatgagaaacaaacttttaaa 26025964  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 25424434 - 25424364
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaa 144  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||    ||||| |||||||||||    
25424434 tgtgaagaagattttcttcttagacttggctgagttttgatgataacaaactcacatcacaaaagaagaaa 25424364  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 27155862 - 27155955
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaag-aaatatatgtaggcacaagatgaaga 167  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| |||    ||||| |||||||| ||| ||||| ||||||||||||||||    
27155862 tgtgaagaagatttccttcttagacttggctgggttttgatgataa-aaactcacatcacaaaagaagaaaacatatggaggcacaagatgaaga 27155955  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 21546957 - 21546909
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataacaa 122  Q
    |||||||||||||| ||||||||| |||||||  |||||||||||||||    
21546957 tgtgaagaagatttccttcttagatttggttgaattttgatgataacaa 21546909  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 2874263 - 2874191
Alignment:
72 attgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaa 144  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||||||    ||||| |||||||||||    
2874263 attgtgaagaagattttcttcttagacttggatgagtttcgatgataacaaactcacatcacaaaagaagaaa 2874191  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 14309261 - 14309216
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataa 119  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||    
14309261 tgtgaagaagatttccttcttagacttggctgggttttgatgataa 14309216  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 34057039 - 34056969
Alignment:
74 tgtgaagaagattttcttcttagacttggttgggttttgatgataacaaagattcatcataaaagaagaaa 144  Q
    |||||||||| ||| ||||||||| ||||||| ||||||||||||| |||    |||||||||||||||||    
34057039 tgtgaagaagttttccttcttagatttggttgagttttgatgataataaactcacatcataaaagaagaaa 34056969  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 2874123 - 2874008
Alignment:
202 tctttatatttgatttatcattttcaacatttttataactcataatgcttggaaattcattggaacataatcacaaatcattttcttagttaaatataag 301  Q
    ||||||| |||| ||||||  |||||| | || ||||||| | ||||||   | ||||||| |||| | |||||||||| |||||| |||||||||||||    
2874123 tctttatctttgctttatcgctttcaatagttatataacttagaatgctaaaacattcatttgaactttatcacaaatctttttctaagttaaatataag 2874024  T
302 attatatgtgaaacaa 317  Q
    | | |||| |||||||    
2874023 agtctatgagaaacaa 2874008  T

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