View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_16 (Length: 431)
Name: NF11967_low_16
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 29144776 - 29145179
Alignment:
| Q |
18 |
actgctccatgttcttcttctcagctacctattgaccccaagaagaaaaccannnnnnnnnnnnnnnnnnncaagccaattggacagaacatgaaaaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29144776 |
actgctccatgttcttcttctcagctacctattgaccccaagaagaaaaccacttcttcttcttcttcttccaagccaattggacagaacatgaaaaatg |
29144875 |
T |
|
| Q |
118 |
gagctaaagtttatgagcaaaagaagaaaagcacagaggaaaatgtcactaacagttactcttctaagacaattgattccattctgaaaaggagattggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29144876 |
gagctaaagtttatgagcaaaagaagaaaagcacagaggaaaatgtcactaacagttactcttctaagacgattgattccattctgaaaaggagattggt |
29144975 |
T |
|
| Q |
218 |
taagccaaattctgactcaattactccacatggttcaactagatctttgctcagcgacacaacttttttagatggctcttcagattatgattctagcttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144976 |
taagccaaattctgactcaattactccacatggttcaactagatctttgctcagcgacacaacttttttagatggctcttcagattatgattctagcttg |
29145075 |
T |
|
| Q |
318 |
gtattaactaaggttgatgataaaaaggatcaagttgttggtcaaaatgaagccaaccctgcatcgaaatcgagttcctcaagccaggttagttttcttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
29145076 |
gtattaactaaggttgatgataaaaaggatcaagttgttggtcaaaatgaagccaaccctgcatcgaaatcgggctcctcaagccaggttagttttcttt |
29145175 |
T |
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| Q |
418 |
tctc |
421 |
Q |
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|||| |
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| T |
29145176 |
tctc |
29145179 |
T |
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