View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_18 (Length: 421)
Name: NF11967_low_18
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 16564952 - 16564544
Alignment:
| Q |
1 |
taaatcaatcattttctcaaaatgcacaaaaaa-cagatcgaaagacatctaaattttgtctttgttgcaattgcagttgtaaatatggttctaaatttg |
99 |
Q |
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| T |
16564952 |
taaatcaatcattttctcaaaatgcacaaaaaaacagatcgaaagacatctaaattttgtctttgttgcaattgcagttgtaaatatggttctaaatttg |
16564853 |
T |
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| Q |
100 |
aggtttagtcacacttgcaattaaactctagggtacggaagatgtcaccatcattaaaatttccttgcaaatgtgaagagtgg---ataggatgatatat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
16564852 |
aggtttagtcacacttgcaattaaactctagggtacggaagatgtcaccatcattaaaatttccttgcaaatgtgaagggtggtggataggatgatatat |
16564753 |
T |
|
| Q |
197 |
acatgtatattgtcgatcgataatccctttaaaaatgtacattttaaagatgacgatagttgcaaaaagtgtgaaagtagaatctagtcctatctcttga |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16564752 |
acatgtatattgtcgatcgataatccctttaaaaatgtgcattttaaagatgacgatagttgcaaaaagtgtgaaagtagaatctagtcctatctcttga |
16564653 |
T |
|
| Q |
297 |
gacaagtgatggtttttgcactataaagagaatccatgttgaaagaacttgaaaaggagagccatgaggaaagaaagaaagagaggggaagggttagtat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16564652 |
gacaagtgatggtttttgcactataaagagaatccatgttgaaagaacttgaaaaggagagccatgaggaaagaaagaaagagaggggaagggttagtat |
16564553 |
T |
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| Q |
397 |
gtgtcagct |
405 |
Q |
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| T |
16564552 |
gtgtcagct |
16564544 |
T |
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