View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_19 (Length: 409)
Name: NF11967_low_19
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_19 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 1326251 - 1326646
Alignment:
| Q |
1 |
atcatgtattgatagaagaggaaatagacacaatcatgcattttgctgcacaaactcatgttgatagctcatttggaaactctatggaattcacctacaa |
100 |
Q |
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| T |
1326251 |
atcatgtattgatagaagaggaaatagacacaatcatgcattttgctgcacaaactcatgttgataactcatttggaaactctatggaattcacctacaa |
1326350 |
T |
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| Q |
101 |
taacatatatggaacacatgttcttcttgaagcatgcagggccacaaattgtgttaaaaggttcattcatgttagtactgatgaagtttatggtgaaacc |
200 |
Q |
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| T |
1326351 |
taacatatatggaacacatgttcttcttgaagcatgcagggccacaaattgtgttaaaaggttcattcatgttagtactgatgaagtttatggtgaaacc |
1326450 |
T |
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| Q |
201 |
gatttagatgccaatatcggaaaccatgaaacatctcagcttttaccaacaaatccttattctgcaacaaaagcaggtgctgaaatgttggttatggctt |
300 |
Q |
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| T |
1326451 |
gatttagatgccaatatcggaaaccatgaaacatctcagcttttaccaacaaatccttattctgcaacaaaagcaggtgctgaaatgttggttatggctt |
1326550 |
T |
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| Q |
301 |
atcatagatcctatgatcttccaattataacctctagaggcaataatgtttatggtccaaaccaatatcctgaaaagcttgttcctaagttcatct |
396 |
Q |
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| T |
1326551 |
atcatagatcctatgatcttccaattataacctctagaggcaataatgtttatggtccaaaccaatatcctgaaaagcttgttcctaagttcatct |
1326646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 287
Target Start/End: Original strand, 20143 - 20272
Alignment:
| Q |
158 |
aaggttcattcatgttagtactgatgaagtttatggtgaaaccgatttagatgccaatatcggaaaccatgaaacatctcagcttttaccaacaaatcct |
257 |
Q |
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| T |
20143 |
aaggttcattcatgtcagtaccgatgaggtctatggggagaccgatgaagatgctgttgttggaaaccatgaggcttctcaacttcttcccacaaacccg |
20242 |
T |
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| Q |
258 |
tattctgcaacaaaagcaggtgctgaaatg |
287 |
Q |
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| T |
20243 |
tactctgcaacaaaagcaggagcggaaatg |
20272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 17798252 - 17798300
Alignment:
| Q |
219 |
ggaaaccatgaaacatctcagcttttaccaacaaatccttattctgcaa |
267 |
Q |
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| T |
17798252 |
ggaaaccatgaagcctctcagcttttagaaacaaacccttattctgcaa |
17798300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 19106692 - 19106740
Alignment:
| Q |
219 |
ggaaaccatgaaacatctcagcttttaccaacaaatccttattctgcaa |
267 |
Q |
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| T |
19106692 |
ggaaaccatgaagcctctcagcttttagaaacaaacccttattctgcaa |
19106740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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