View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_20 (Length: 406)
Name: NF11967_low_20
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 5112255 - 5111869
Alignment:
| Q |
20 |
tccttggcttgaaattcaatgtggttcatcatgcaagaggattagtggtgaggtaacattgcaactttctgattcttcaaatataccaatttcttcaaat |
119 |
Q |
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| T |
5112255 |
tccttggcttgaaattcaatgtggttcatcatgcaagaggattagtggtgaggtaacattgcaactttctgattcttcaaatataccaatttcttcaaat |
5112156 |
T |
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| Q |
120 |
ggattttcttgttgggtgaggattgaatgggaaaataatggacagaagaaaaattgtgtgaatgctttttgtgatgttatcaagttgtgttgtgatcaat |
219 |
Q |
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| T |
5112155 |
ggtttctcttgttgggtgaggattgaatgggaaaataatggacagaagaaaaattgtgtgaatgctttttgtgatgttgtcaagttgtgttgtgatcaat |
5112056 |
T |
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| Q |
220 |
caagggactatgttttcacttggaggtttcatactcgttctagggaagcttctcaatccagttgcaatgcttgaaaattgaaacttgcacatagttcttc |
319 |
Q |
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| T |
5112055 |
caagggactatgttttcacttggaggtttcatactcgttctagggaagcttctcaatccagttgcaatgcttgaaaattgaaacttgcacatagttcttc |
5111956 |
T |
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| Q |
320 |
tctagagtgtactctagtctatagtatagtatgagtaattaatttcttgtctcttagctagctatagatatatactatatatgtgta |
406 |
Q |
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| T |
5111955 |
tctagagtgtactctagtctatagtatagtatgagtaattaatttcttgtctcttagctagctatagatatatactatatatgtgta |
5111869 |
T |
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