View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_25 (Length: 366)
Name: NF11967_low_25
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 16564940 - 16565307
Alignment:
| Q |
1 |
aatgattgatttaatagagaaattatagtatagttaattatgaatattttaagaagaataccacaaaaatacttnnnnnnntgtacataaataaattatg |
100 |
Q |
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| T |
16564940 |
aatgattgatttaatagaaaaattatagtatagttaattatgaatattttaagaagaataccacaaaaatagttaaaaaaatgtacataaaaaaattatg |
16565039 |
T |
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| Q |
101 |
tcattgcaataatataagtcatatttaactacagttctgtgcaatat---------atcatgcaccaatatgacaaactaagatcaaattcgttgtcata |
191 |
Q |
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| T |
16565040 |
tcattgcaataatataagtcatatttaactacagttttgtgcaatatatatcatatatcatgcaccaatatgacaaactaagatcaaattcgttgtcata |
16565139 |
T |
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| Q |
192 |
attgtttttataagctttttacccttaaaagactccatttccactctgagtgccatcattgcagttgcattggtgggcatgcatgggttgctttaagcct |
291 |
Q |
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| T |
16565140 |
attgtttttataagctttttacccttaaaagactccatttccactctcagtgccatcattgcagttgcattggtgggcatgcatgggttgctttaagcct |
16565239 |
T |
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| Q |
292 |
ttaatatcgactttaattgtttaataaagtacnnnnnnngctaggaatgatggaatgtccctttgctt |
359 |
Q |
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| T |
16565240 |
ttaatatcgactttaattgtttaataaagtactttttttgctaggaatgatggaatgtccctttgctt |
16565307 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 52822457 - 52822524
Alignment:
| Q |
218 |
aaaagactccatttccactctgagtgccatcattgcagttgcattggtgggcatgcatgggttgcttt |
285 |
Q |
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| T |
52822457 |
aaaagactccacttccactcttagtgtcattattgcagctgagttggtggggatgcataggttgcttt |
52822524 |
T |
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