View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_26 (Length: 364)
Name: NF11967_low_26
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 5332384 - 5332715
Alignment:
| Q |
19 |
caagctatgttagctttaatgaaaactcccatgtcatttcccttgtatgaaatttggaaagccaacattaactactattgtaataaaattaagattatgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5332384 |
caagctatgttagctttaatgaaaactcccatgtcatttcccttgtatgaaatttggaaagccaacattaactacaattgtaataaaattaagattatgt |
5332483 |
T |
|
| Q |
119 |
cattttcttggttaactaaatgatttactcagatgcattatttgaacttattcgcttaattctcttaaacgaaatcaaggctcatagatttacttgttga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5332484 |
cattttcttggttaactaaatgatttactcagatgcattatttgaacttattcacttaattctcttaaacgaaatcatggctcatagatttacttgttga |
5332583 |
T |
|
| Q |
219 |
ttgcaaagcttgtttatcgtcgtccttatctagtaatcattgtcaaaaccaagtagtccttattcacttagttcctattgtatgcctattataggatttt |
318 |
Q |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332584 |
ttacaaagcttgtttatcgccgtccttatctagtaatcattgtcaaaaccaagtagtccttattcacttagttcctattgtatgcctattataggatttt |
5332683 |
T |
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| Q |
319 |
attttatgatttatgcattttgagatctctgc |
350 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5332684 |
attttatgatttatgcattttgagatctctgc |
5332715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 29519672 - 29519341
Alignment:
| Q |
19 |
caagctatgttagctttaatgaaaactcccatgtcatttcccttgtatgaaatttggaaagccaacattaactactattgtaataaaattaagattatgt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
29519672 |
caagctatgttagctttaatgaaaactcccatgtcattttccttgtatgaaatttggaaagccaacgttaactacttctgtaataaaattaagattatgt |
29519573 |
T |
|
| Q |
119 |
cattttcttggttaactaaatgatttactcagatgcattatttgaacttattcgcttaattctcttaaacgaaatcaaggctcatagatttacttgttga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29519572 |
cattttcttggttaactaaatgatttactcagatgcattatttgaacttattcacttaattctcttaaacgaaatcatggctcatagatttacttgttga |
29519473 |
T |
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| Q |
219 |
ttgcaaagcttgtttatcgtcgtccttatctagtaatcattgtcaaaaccaagtagtccttattcacttagttcctattgtatgcctattataggatttt |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519472 |
ttgtaaagcttgtttatcgtcgtccttatctagtaatcattgtcaaaaccaagtagtccttattcacttagttcctattgtatgcctattataggatttt |
29519373 |
T |
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| Q |
319 |
attttatgatttatgcattttgagatctctgc |
350 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29519372 |
attttatgatttatgcattttgagatctctgc |
29519341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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