View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_3 (Length: 699)
Name: NF11967_low_3
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_3 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 15 - 676
Target Start/End: Original strand, 14180257 - 14180942
Alignment:
| Q |
15 |
catagggattgggtgtattaattttctatgtaattagatcagagtacttcttgttaattttaatcaatattactcctatctcttttaattttcgtgatta |
114 |
Q |
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| T |
14180257 |
catagggattgggtgtattaattttctatgtaattagatcagagtacttcttgttaattttaatcaatattattcctatctcttttaattttcgtgatta |
14180356 |
T |
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| Q |
115 |
tcattcaacacaaattattgacacattatttttaatacagaatgagctcatgcaacaacaaatggagaatctccaaaggaaggtgacatatataattaaa |
214 |
Q |
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| T |
14180357 |
tcattcaacacaaattattgacacattattttcaatacagaatgagctcatgcaacaacaaatggagaatctccaaaggaaggtgacatatataattaaa |
14180456 |
T |
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| Q |
215 |
ctaaatatctctttaattaacatataggtactcacctatatcattgatcattaatagacacatcattaataattgtatatatgttgtgattcaggaaaga |
314 |
Q |
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| T |
14180457 |
ctaaatatctctttaattaacatataggtactcacctatatcattgatcattaatagacacatcattaataattgtatatatgttgtgattcaggaaaga |
14180556 |
T |
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| Q |
315 |
atcttgcaagatgaaaacatgaatttatccaactgggtaagaatatttactcctactaatgttattaccaccttttgaatttgaatctggatttgtatat |
414 |
Q |
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| T |
14180557 |
atcttgcaagatgaaaacatgaatttatccaactgggtaagaatatttactcctactaatgttattaccaccttttgaatttgaatctggatttgtatat |
14180656 |
T |
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| Q |
415 |
gcacatacattataccatgatttgacactgagattgcagatgcaatgttgttctagagga--------------------cggatgtaattgcagttgcg |
494 |
Q |
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| T |
14180657 |
gcacatacattataccatgatttgacactgagattgcagatgcaatgttgttctagaggacttgtaaaacttttatattgcggatgtaattgcagttgcg |
14180756 |
T |
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| Q |
495 |
aaatttataactatgtattaaactaattaattttttaatctcatca----aattaatatattcttttaacttgatgggatattaatttggacatttaatt |
590 |
Q |
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| T |
14180757 |
aaatttagaactatgtattaaactaattaattttttaatctcatcaaattaattaatatattcttttaacttgatgggatattaatttggacatttaatt |
14180856 |
T |
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| Q |
591 |
taattgttcaggagcataaggcagtgatggaaaacaaggctgtgatggatcagtttgcattttttgaggaccaaccacttagcagg |
676 |
Q |
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| T |
14180857 |
taattgttcaggagcataaggcagtgatggaaaacaaggctgtgatggatcagtttgcattttttgaggaccaaccacttagcagg |
14180942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 102 - 345
Target Start/End: Complemental strand, 95571 - 95345
Alignment:
| Q |
102 |
attttcgtgattatcattcaacacaaattattgacacattatttttaatacagaatgagctcatgcaacaacaaatggagaatctccaaaggaaggtgac |
201 |
Q |
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| T |
95571 |
attttcatgactatccttcaacacaaattattgacacattatttttaatgcagaatgagctcatgcagcagcaaattgataatatgatcaggaaggtgac |
95472 |
T |
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| Q |
202 |
atatataattaaactaaatatctctttaattaacatataggtactcacctatatcattgatcattaatagacacatcattaataattgtatatatg---t |
298 |
Q |
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| T |
95471 |
atatataattaaactaaccctctctttagtta--------------------atcattgactattaatagacacatgatccataattgtatatatgttat |
95392 |
T |
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| Q |
299 |
tgtgattcaggaaagaatcttgcaagatgaaaacatgaatttatcca |
345 |
Q |
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| T |
95391 |
tgtgattcaggaaagaatcttgcaagatgaaaatatcaatttatcca |
95345 |
T |
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