View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_33 (Length: 336)
Name: NF11967_low_33
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 2890592 - 2890858
Alignment:
| Q |
20 |
aaaatatggattcaggtattattttccatgagttgaaacaaccggaatctaggttatgtttggatgaaagattttaaaggagaagggaagggagggcttt |
119 |
Q |
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| T |
2890592 |
aaaatatggattcaggtattattttccatgagttgaaacaaccggaatctaggttatgtttgaatgaaagattttaaaggagaagggaagggagggcttt |
2890691 |
T |
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| Q |
120 |
tcttttttaaattaacaaaactatcatttattctttctttcaacctttgtaaaacctcgatatactaatatannnnnnngacaaaacagacgtagaacat |
219 |
Q |
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| T |
2890692 |
tcttttttaaattaacaaaactatcattta----ttctttcaacctttgtaaaacctcgatatactaatatatatttttgacaaaacagacgtagaacat |
2890787 |
T |
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| Q |
220 |
ctacaatggagcttcctcgtttgggtgcctatgtatgtaacatccacatacacacatcaccaattccatag |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2890788 |
ctacaatggagcttcctcgtttgggtgcctatgtatgtaacatccacatacacacatcacccattccatag |
2890858 |
T |
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