View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_36 (Length: 320)
Name: NF11967_low_36
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 3527656 - 3527944
Alignment:
| Q |
20 |
gccttatcattcaaattattcattacattagaacattttttgttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgta |
119 |
Q |
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| T |
3527656 |
gccttatcattcaaattattcattacattagcacattttttgttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgta |
3527755 |
T |
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| Q |
120 |
cctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaac |
219 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527756 |
cctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaac |
3527855 |
T |
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| Q |
220 |
attgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttggacctcttagttcat |
308 |
Q |
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| T |
3527856 |
attgggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
3527944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 94 - 313
Target Start/End: Original strand, 3532157 - 3532376
Alignment:
| Q |
94 |
cccagttgaccatgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatag |
193 |
Q |
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| T |
3532157 |
cccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcagtgtcatag |
3532256 |
T |
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| Q |
194 |
ttaaagccagaaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttg |
293 |
Q |
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| T |
3532257 |
ttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaattgtctatgttttgacctg |
3532356 |
T |
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| Q |
294 |
gacctcttagttcatctctc |
313 |
Q |
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||||||||||||||| |||| |
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| T |
3532357 |
gacctcttagttcatttctc |
3532376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 3554955 - 3555243
Alignment:
| Q |
20 |
gccttatcattcaaattattcattacattagaacattttttgttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgta |
119 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
3554955 |
gccttatcattcaaattattcattacattagcacattttttgttcaatggttgcttgtcccaatcacttcgttccccacttgaccatgcataggaatgta |
3555054 |
T |
|
| Q |
120 |
cctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaac |
219 |
Q |
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|||||||||| ||||||| |||||| | | |||||||| ||||| |||||||||||||||||| ||||||| || |||||||||||||| || ||||| |
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| T |
3555055 |
cctcgtacaccaatttgttccctatgttaacatttagaggctttgtcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaagactagaac |
3555154 |
T |
|
| Q |
220 |
attgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttggacctcttagttcat |
308 |
Q |
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| T |
3555155 |
atctggatttgctttatgaacagttgtagctccttggctcatgtacttgtgccaattgttttcgttttgttttggacctcttagttcat |
3555243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 313
Target Start/End: Original strand, 3549447 - 3549661
Alignment:
| Q |
99 |
ttgaccatgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaa |
198 |
Q |
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|||| ||||||||||||||||| || ||||| ||||||||||||||| | | |||||||| ||||| |||||||||||||||||| ||||||| || || |
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| T |
3549447 |
ttgatcatgcataggaatgtacttcatacaccaatttgtctcctatgttaacatttagaggctttgtcttcaagaagcttaaatcagtgtcataatttaa |
3549546 |
T |
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| Q |
199 |
gccagaaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttggacct |
298 |
Q |
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|||||||||||| || |||||||| |||||| ||||||| || |||||| ||||||||||||||||||| | |||| || ||||||||| ||||||| |
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| T |
3549547 |
gccagaaacaaaaactagaacatttggatttgctttgtggactgttgttactccttggctcatgtatttgtaccaattgtcattgttttgacctggacct |
3549646 |
T |
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| Q |
299 |
cttagttcatctctc |
313 |
Q |
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| T |
3549647 |
cgtagttcatttctc |
3549661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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