View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11967_low_37 (Length: 317)
Name: NF11967_low_37
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_37 |
 | |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 14588878 - 14589183
Alignment:
| Q |
12 |
agagacgacgaagaagatgaaaagaatcctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttggga |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588878 |
agagatgacgaagaagatgaaaagaatcctgaatgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttggga |
14588977 |
T |
|
| Q |
112 |
gcgaatcaaagttaagtcaacaagatataactgagttagctcacggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagaggg |
211 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588978 |
gcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagaggg |
14589077 |
T |
|
| Q |
212 |
tgtacttgaattaccgaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggtacctcagtttaagatcttaactcgtggatca |
311 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
14589078 |
tgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggtaccccagtttaagatcttaactcatggatca |
14589177 |
T |
|
| Q |
312 |
attggt |
317 |
Q |
| |
|
|||||| |
|
|
| T |
14589178 |
attggt |
14589183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 14622536 - 14622838
Alignment:
| Q |
12 |
agagacgacgaagaagatgaaaagaatcctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttggga |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14622536 |
agagatgacgaagaagatgaaaagaatcctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttggga |
14622635 |
T |
|
| Q |
112 |
gcgaatcaaagttaagtcaacaagatataactgagttagctcacggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagaggg |
211 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14622636 |
gcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagaggg |
14622735 |
T |
|
| Q |
212 |
tgtacttgaattaccgaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggtacctcagtttaagatcttaactcgtggatca |
311 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||| |
|
|
| T |
14622736 |
tgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggcaccccagtttaagatcttaactcatgaatca |
14622835 |
T |
|
| Q |
312 |
att |
314 |
Q |
| |
|
||| |
|
|
| T |
14622836 |
att |
14622838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 316
Target Start/End: Original strand, 12846458 - 12846737
Alignment:
| Q |
37 |
atcctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttgggagcgaatcaaagttaagtcaacaaga |
136 |
Q |
| |
|
||||||| ||| ||||||| || |||| ||||||||| |||||||||||| ||||||||||||||||||||||||| | | ||||| ||| |||| |
|
|
| T |
12846458 |
atcctgattggttgaaaataaaaaaatggctggattcaagagaatcatcttccgttgtttacattggatttgggagcgagttgaggttaacgcaaaaaga |
12846557 |
T |
|
| Q |
137 |
tataactgagttagctcacggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattaccgaaagggttc |
236 |
Q |
| |
|
| |||| || |||||||| ||||||||||||||||||||||| |||||||||||||| ||| | || ||| ||||| |||||| ||||| ||||| ||| |
|
|
| T |
12846558 |
tctaaccgaattagctcatggaattgagctttctaggttacctttcttttgggctttgaaaaacctaaaaaagggtacacttgagttacctaaaggattc |
12846657 |
T |
|
| Q |
237 |
gaggaaagaacaaaagaacgcggaattgtttggaaaacttgggtacctcagtttaagatcttaactcgtggatcaattgg |
316 |
Q |
| |
|
|| || |||| |||||||| ||||||||||||||||| |||| ||| ||| ||||||||||| | | |||| ||||||| |
|
|
| T |
12846658 |
gaagatcgaaccaaagaacgtggaattgtttggaaaacatgggcaccccagcttaagatcttatcccatggagcaattgg |
12846737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 29954455 - 29954760
Alignment:
| Q |
12 |
agagacgacgaagaagatgaaaagaatcctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttggga |
111 |
Q |
| |
|
|||||||||||||| || |||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29954455 |
agagacgacgaagaggaagaaagcaaccctagttgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctgttgtttacattggatttggga |
29954554 |
T |
|
| Q |
112 |
gcgaatcaaagttaagtcaacaagatataactgagttagctcacggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagaggg |
211 |
Q |
| |
|
|||| | |||||||| ||||||||| ||||||||||||| || |||||||||||||||||||| || |||||||||||||| ||| ||||||||||||| |
|
|
| T |
29954555 |
gcgagttgaagttaagccaacaagatctaactgagttagcgcatggaattgagctttctaggttgcctttcttttgggctttgaaaaatcttaaagaggg |
29954654 |
T |
|
| Q |
212 |
tgtacttgaattaccgaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggtacctcagtttaagatcttaactcgtggatca |
311 |
Q |
| |
|
| |||||||||||| ||||| || |||||||||||||||||| | ||||| ||||||||||| |||| |||||| ||||||||||| ||| ||||||| |
|
|
| T |
29954655 |
tacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgtttggaaaacatgggcacctcaacttaagatcttagctcatggatca |
29954754 |
T |
|
| Q |
312 |
attggt |
317 |
Q |
| |
|
|||||| |
|
|
| T |
29954755 |
attggt |
29954760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 51369998 - 51369693
Alignment:
| Q |
12 |
agagacgacgaagaagatgaaaagaatcctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttggga |
111 |
Q |
| |
|
||||||||| || | |||||||| || ||||| ||||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
51369998 |
agagacgaccaacatgatgaaaacaaccctgattgggtccacatcaaggcatggttggactcaaaagaatcatcttctgttgtttacattggatttggaa |
51369899 |
T |
|
| Q |
112 |
gcgaatcaaagttaagtcaacaagatataactgagttagctcacggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagaggg |
211 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||| ||||||| |||||| || |
|
|
| T |
51369898 |
gcgagtcaaagttagatcaacaagatttaactgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacgg |
51369799 |
T |
|
| Q |
212 |
tgtacttgaattaccgaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggtacctcagtttaagatcttaactcgtggatca |
311 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| | || |||||| ||| | |||| |
|
|
| T |
51369798 |
tgtatctgaattacctcaaggattcgaggaaagaacaaaagaacgtggaattgtttggaaaacctgggtaccccagatcaaaatcttagctcatccatca |
51369699 |
T |
|
| Q |
312 |
attggt |
317 |
Q |
| |
|
|||||| |
|
|
| T |
51369698 |
attggt |
51369693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 49 - 313
Target Start/End: Original strand, 11531805 - 11532069
Alignment:
| Q |
49 |
tgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttgggagcgaatcaaagttaagtcaacaagatataactgagtt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | || |||||||||||||| ||| |||||| |
|
|
| T |
11531805 |
tgaaaatcaaggcatggttggattcaaaagaatcgtcttctgttgtttacattggatttgggagcgagacgaaaataagtcaacaagatctaattgagtt |
11531904 |
T |
|
| Q |
149 |
agctcacggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattaccgaaagggttcgaggaaagaaca |
248 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||||||| |||||||||||| |||| || |||||||||||| |
|
|
| T |
11531905 |
agctcatggaattgagctttctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaagaatttgaggaaagaaca |
11532004 |
T |
|
| Q |
249 |
aaagaacgcggaattgtttggaaaacttgggtacctcagtttaagatcttaactcgtggatcaat |
313 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| ||| || ||||||||||| | | ||||||||| |
|
|
| T |
11532005 |
aaagaacgtggaattgtttggaaaacatgggcaccacaacttaagatcttagcacatggatcaat |
11532069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 39 - 317
Target Start/End: Original strand, 20492617 - 20492895
Alignment:
| Q |
39 |
cctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttgggagcgaatcaaagttaagtcaacaagata |
138 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| | |||||||| |||||||||| |
|
|
| T |
20492617 |
cctgattgggtgaaaatcaaggcttggttggattcaaaagaatcatcttcggttgtttacattggattcgggagcgagttaaagttaaatcaacaagatc |
20492716 |
T |
|
| Q |
139 |
taactgagttagctcacggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattaccgaaagggttcga |
238 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||| | |||||||| ||| |||||||||||| |||| || || |
|
|
| T |
20492717 |
taactgagttagctcatggaattgagcaatctaggttacctttcttttgggctttgaaaaaccttaaagaaggtacacttgaattacccgaaggatttga |
20492816 |
T |
|
| Q |
239 |
ggaaagaacaaaagaacgcggaattgtttggaaaacttgggtacctcagtttaagatcttaactcgtggatcaattggt |
317 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||| ||| ||| | ||||||||| ||| ||||||||||||| |
|
|
| T |
20492817 |
agaaagaacaaaagaatatggaatcgtttggaaaacatgggcaccacagctaaagatcttagctcatggatcaattggt |
20492895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 1361805 - 1362110
Alignment:
| Q |
12 |
agagacgacgaagaagatgaaaagaatcctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttggga |
111 |
Q |
| |
|
|||||||| ||||| || || || |||||||| |||||||||||||| | ||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1361805 |
agagacgatgaagaggaagagaacaatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacattggatttggga |
1361904 |
T |
|
| Q |
112 |
gcgaatcaaagttaagtcaacaagatataactgagttagctcacggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagaggg |
211 |
Q |
| |
|
| || | ||||| ||||| | ||| |||||||||| ||||| ||||||||||||||| |||| | |||||||||||||| || |||| |||||||| |
|
|
| T |
1361905 |
gtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagctttctgggttgtctttcttttgggctttgaagaatctgaaagaggg |
1362004 |
T |
|
| Q |
212 |
tgtacttgaattaccgaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggtacctcagtttaagatcttaactcgtggatca |
311 |
Q |
| |
|
| |||||||||||| |||| || ||||||||||| ||||||||||||||||||||||| || |||| ||||||| |||| |||||| ||| |||| || |
|
|
| T |
1362005 |
tacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttggaagacatgggcacctcagcttaaaatcttagctcatggagca |
1362104 |
T |
|
| Q |
312 |
attggt |
317 |
Q |
| |
|
|||||| |
|
|
| T |
1362105 |
attggt |
1362110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 1354943 - 1355224
Alignment:
| Q |
36 |
aatcctgactgggtgaaaatcaaggcatggttggattcaaaagaatcatcttctattgtttacattggatttgggagcgaatcaaagttaagtcaacaag |
135 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||| || | ||||| ||||| ||| |
|
|
| T |
1354943 |
aatcctgattgggtgaaaatcaaagggtggttggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaag |
1355042 |
T |
|
| Q |
136 |
atataactgagttagctcacggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattaccgaaagggtt |
235 |
Q |
| |
|
|| |||||||||| ||| | ||||||||||||||| |||| | ||||||||| |||| || |||| ||||||||| |||||||||||| |||| || |
|
|
| T |
1355043 |
atttaactgagttggcttatggaattgagctttctgggttgtctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatt |
1355142 |
T |
|
| Q |
236 |
cgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggtacctcagtttaagatcttaactcgtggatcaattggt |
317 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| || |||| ||||||| ||||||||||| ||| |||| |||||||| |
|
|
| T |
1355143 |
cgaggaaaggacgaaagaacgcggaattgtttggaagacatgggcacctcagcttaagatcttagctcatggagcaattggt |
1355224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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