View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11967_low_38 (Length: 314)

Name: NF11967_low_38
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11967_low_38
NF11967_low_38
[»] chr3 (1 HSPs)
chr3 (8-314)||(25896801-25897107)
[»] chr7 (1 HSPs)
chr7 (11-104)||(3886300-3886393)
[»] chr8 (1 HSPs)
chr8 (50-113)||(35611168-35611231)
[»] chr5 (1 HSPs)
chr5 (50-113)||(29290469-29290532)
[»] chr2 (2 HSPs)
chr2 (50-113)||(4019575-4019638)
chr2 (50-113)||(24464857-24464920)
[»] chr1 (3 HSPs)
chr1 (8-70)||(30164791-30164853)
chr1 (8-70)||(30170492-30170554)
chr1 (8-70)||(30186033-30186095)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 25897107 - 25896801
Alignment:
Q  8 gagatgaaattcccgattaaaggcctgagacgattagccaaaactttggagatcattttgtagaggacattgcataaagagatagggcgaaggtctttaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25897107 gagatgaaattcccgattaaaggcctgagacgattagccaaaactttggagatcattttgtagaggacattgcataaagagatagggcgaaggtctttaa 25897008  T
Q  108 ttgtttatggatggtcacctttaggcgcaaccaacgtttgaagagtagcttgtgggaaaacatcaagcgatggtatcatacagatagctctatctagtcg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25897007 ttgtttatggatggtcacctttaggcgcaaccaacgtttgaagagtagcttgtgggaaaacatcaagcgatggtatcatacagatagctctatctagtcg 25896908  T
Q  208 agcttctttggaagaacttgtaatgatgcttttaaacctagtgaattgataacctatgagtggaaagttacatagatcgcaatcagagacaacatcttgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25896907 agcttctttggaagaacttgtaatgatgcttttaaacctagtgaattgataacctatgagtggaaagttacatagatcgcaatcagagacaacatcttgg 25896808  T
Q  308 aaacctc 314  Q
    |||||||    
T  25896807 aaacctc 25896801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 3886300 - 3886393
Alignment:
Q  11 atgaaattcccgattaaaggcctgagacgattagccaaaactttggagatcattttgtagaggacattgcataaagagatagggcgaaggtctt 104  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||| |||| |||||||| | ||||||||||||||| ||| || |||||||||    
T  3886300 atgaaattcctgatcaaaggcctaagacgattagccaaaactttgaagatgattttgtaaacgacattgcataaagaaatatggtgaaggtctt 3886393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 35611231 - 35611168
Alignment:
Q  50 actttggagatcattttgtagaggacattgcataaagagatagggcgaaggtctttaattgttt 113  Q
    ||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  35611231 actttagagataattttgtagaggacgttgcacaaagagatagggcggaggtctttaattgttt 35611168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 29290532 - 29290469
Alignment:
Q  50 actttggagatcattttgtagaggacattgcataaagagatagggcgaaggtctttaattgttt 113  Q
    ||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  29290532 actttagagataattttgtagaggacgttgcacaaagagatagggcggaggtctttaattgttt 29290469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 4019575 - 4019638
Alignment:
Q  50 actttggagatcattttgtagaggacattgcataaagagatagggcgaaggtctttaattgttt 113  Q
    ||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  4019575 actttagagataattttgtagaggacgttgcacaaagagatagggcggaggtctttaattgttt 4019638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 24464920 - 24464857
Alignment:
Q  50 actttggagatcattttgtagaggacattgcataaagagatagggcgaaggtctttaattgttt 113  Q
    ||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  24464920 actttagagataattttgtagaggacgttgcacaaagagatagggcggaggtctttaattgttt 24464857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 30164853 - 30164791
Alignment:
Q  8 gagatgaaattcccgattaaaggcctgagacgattagccaaaactttggagatcattttgtag 70  Q
    |||||||| || || |||||||| | ||||||||| |||||||||||||| || |||||||||    
T  30164853 gagatgaattttccaattaaaggtcggagacgatttgccaaaactttggaaataattttgtag 30164791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 30170554 - 30170492
Alignment:
Q  8 gagatgaaattcccgattaaaggcctgagacgattagccaaaactttggagatcattttgtag 70  Q
    |||||||| || || |||||||| | ||||||||| |||||||||||||| || |||||||||    
T  30170554 gagatgaattttccaattaaaggtcggagacgatttgccaaaactttggaaataattttgtag 30170492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 30186095 - 30186033
Alignment:
Q  8 gagatgaaattcccgattaaaggcctgagacgattagccaaaactttggagatcattttgtag 70  Q
    |||||||| || || |||||||| | ||||||||| |||||||||||||| || |||||||||    
T  30186095 gagatgaattttccaattaaaggtcggagacgatttgccaaaactttggaaataattttgtag 30186033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University