View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_47 (Length: 241)
Name: NF11967_low_47
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_47 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 51014755 - 51014977
Alignment:
| Q |
19 |
aatgcaccatccataaaatcagtaccattgttgctaacttctttgacttcaatcccaaacctcattcctccaagacaatgtccagctatattgcaaataa |
118 |
Q |
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| T |
51014755 |
aatgcaccatccataaaatcagtaccattgttgctaacttctttgacttcaatcccaaacctcattcctccaagacaatgtccagctatattgcaaatga |
51014854 |
T |
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| Q |
119 |
accaatatttcttcaccttattcagaaccacttcatcttctccactttcatacttagccaacactccactacttgtttcacatgatctaaaagtttcctc |
218 |
Q |
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| T |
51014855 |
accaatatttcttcaccttattcagaaccacttcatcttctccactttcatacttagccaacactccactacttgtttcacatgatctaaaagtttcctc |
51014954 |
T |
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| Q |
219 |
tctcacttcatacacattatgtt |
241 |
Q |
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| T |
51014955 |
tctcacttcatacacattatgtt |
51014977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 1040977 - 1041093
Alignment:
| Q |
60 |
tttgacttcaatcccaaacctcattcctccaagacaatgtccagctatattgcaaataaaccaatatttcttcaccttattcagaaccacttcatcttct |
159 |
Q |
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| T |
1040977 |
tttgacttcaattccaaaccccattcctccaaggcaatgcccagctatattacaaatgaa-caatatcacttcaccttattgagaaccacttgatcttc- |
1041074 |
T |
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| Q |
160 |
ccactttcatacttagcca |
178 |
Q |
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| T |
1041075 |
ccactctcaaacttagcca |
1041093 |
T |
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