View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11967_low_5 (Length: 629)
Name: NF11967_low_5
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_5 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 18 - 617
Target Start/End: Original strand, 25896225 - 25896824
Alignment:
| Q |
18 |
aaaaatggcagcaacacaaagcacacattctcctatggaggttacccagtcaaagcattttttatcggcaggacttggctcccaagcctgccgggagtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25896225 |
aaaaatggcagcaacacaaagcacacattctcctatggaggttacccagtcaaagcattttttatcggaaggacttggctcccaagcctgccgggagtca |
25896324 |
T |
|
| Q |
118 |
tgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgcatcaaagaccttgtacgtgtctataaatcggatattcttatcct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
25896325 |
tgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccgtgtatcaaagaccttgtccgtgtctataaaccggatattcttatcct |
25896424 |
T |
|
| Q |
218 |
tattgaaactttagttaataataataaaatttcaagtttgtgttactcgattggctttgatcattatttttcccttgatagtattggtagaagtggaggt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25896425 |
tattgaaactttagttaataataataaaatttcaagtttgtgttactcgattggctttgatcattatttttccgttgatagtattggtagaagtggaggt |
25896524 |
T |
|
| Q |
318 |
atcgctatattttggcataactctgctgattgttctcttttgaattactcccaacaatttattaatatgatcatattcatgatcctatcaaaggtaattg |
417 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25896525 |
atcgctatattttggcataactctgctaattgttctcttttgaattactcccaacaatttattaatatgatcatattcatgatcctatcaaaggtaattg |
25896624 |
T |
|
| Q |
418 |
acgcctcactgctttttacggttactctgacactggcagaagaagagactcttgggacatgcttctctcccttagaaacctattcgatgatccatggtgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25896625 |
acgcctcactgctttttacggttactctgacactggcagaagaagagactcttgggacatgcttctctcccttagaaacctattcgatgatccatggtgt |
25896724 |
T |
|
| Q |
518 |
ataattggtgattttaatgaccatctatctttagctgacaagagaaatgggccagatagagctccttggcttattagaggtttccaagatgttgtctctg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25896725 |
ataattggtgattttaatgaccatctatctttagctgacaagagaaatgggccagatagagctccttggcttattagaggtttccaagatgttgtctctg |
25896824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 75 - 305
Target Start/End: Original strand, 35609631 - 35609861
Alignment:
| Q |
75 |
ttttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgca |
174 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||| |||||||||||| |||| |||||| |||||||||| || | |
|
|
| T |
35609631 |
ttttttatcggcagcgcctggctcccaggcctgccgggagtcatgaatgttatagcttggaactgtcgtggcctaggcaatgtcaaggcagttccctgta |
35609730 |
T |
|
| Q |
175 |
tcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgttactcgattggctt |
274 |
Q |
| |
|
|||||||||| || |||||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
35609731 |
tcaaagacctcgtccgtgtctataaaccggacattgttatccttattgagactttatgcaataataataaaatttctggtttgaagtatgcgattggctt |
35609830 |
T |
|
| Q |
275 |
tgatcattatttttcccttgatagtattggt |
305 |
Q |
| |
|
|||| || |||| || ||||| |||||||| |
|
|
| T |
35609831 |
tgattatcatttctctgttgattgtattggt |
35609861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 75 - 305
Target Start/End: Complemental strand, 4021177 - 4020947
Alignment:
| Q |
75 |
ttttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgca |
174 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||| |||||||||||| |||| |||||| |||||||||| || | |
|
|
| T |
4021177 |
ttttttatcggcagcgcctggctcccaggcctgccgggagtcatgaatgttatagcttggaactgtcgtggcctaggcaatgtcaaggcagttccctgta |
4021078 |
T |
|
| Q |
175 |
tcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgttactcgattggctt |
274 |
Q |
| |
|
|||||||||| || |||||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
4021077 |
tcaaagacctcgtccgtgtctataaaccggacattgttatccttattgagactttatgcaataataataaaatttctggtttgaagtatgcgattggctt |
4020978 |
T |
|
| Q |
275 |
tgatcattatttttcccttgatagtattggt |
305 |
Q |
| |
|
|||| || |||| || ||||| |||||||| |
|
|
| T |
4020977 |
tgattatcatttctctgttgattgtattggt |
4020947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 21948486 - 21948660
Alignment:
| Q |
75 |
ttttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgca |
174 |
Q |
| |
|
|||||||| ||||| | ||||||||| |||||||||||||||||||| | ||||||| ||||||||| || |||| |||||| |||||||||| || | |
|
|
| T |
21948486 |
ttttttattggcagcgcctggctcccaggcctgccgggagtcatgaatgttatagcttggaactgtcggggcctaggcaatgtcaaggcagttccctgta |
21948585 |
T |
|
| Q |
175 |
tcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaattt |
249 |
Q |
| |
|
|||||||||| || |||||||||||| |||| |||||||| || ||||| |||||| |||||||||||||||| |
|
|
| T |
21948586 |
tcaaagacctcgtccgtgtctataaaccggacattcttattctcattgagactttatgcaataataataaaattt |
21948660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 73 - 247
Target Start/End: Complemental strand, 240747 - 240573
Alignment:
| Q |
73 |
cattttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatg |
172 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||| || |||||||| | || | |||||||||| || |
|
|
| T |
240747 |
cattttttatcggcaggacctggctcccaagcctgtcgggagtcatgaatatcatttcttggaactgccgcggtttaggaagtgccaaggcagttccgtg |
240648 |
T |
|
| Q |
173 |
catcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaat |
247 |
Q |
| |
|
|| | ||||||| | || ||||||||| |||||||| |||| ||||||||||| || || || |||||||||| |
|
|
| T |
240647 |
tattagagaccttatccgcgtctataaaccggatattgttatacttattgaaacattggtgcatgataataaaat |
240573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 13491022 - 13490847
Alignment:
| Q |
75 |
ttttttatcggcag-gacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgc |
173 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||| ||| | |||||| |||| ||| ||||||||| || ||||| ||||| |||||||||| || |
|
|
| T |
13491022 |
ttttttatcggcagagact-ggctcccaggcctgctgggggcaatgaatgtcatctcttggaactgtcgaggcttaggaaatgttaaggcagttccttgt |
13490924 |
T |
|
| Q |
174 |
atcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttc |
250 |
Q |
| |
|
|| ||||||||| | || ||||||||||||||| || |||| | |||||||| |||||| | | |||||||||||| |
|
|
| T |
13490923 |
ataaaagaccttatccgcgtctataaatcggatgttgttattttaattgaaaccttagttgaaagtaataaaatttc |
13490847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 72 - 310
Target Start/End: Original strand, 20119391 - 20119629
Alignment:
| Q |
72 |
gcattttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccat |
171 |
Q |
| |
|
||||||||||||||||| | ||| ||||| ||||||||| || |||||||| ||| | | |||||| || || | || ||||| |||||||||| |
|
|
| T |
20119391 |
gcattttttatcggcagagcctggttcccaggcctgccggaagaaatgaatataatatcgtggaactgccgaggcctggggaatgttaaggcagttcctg |
20119490 |
T |
|
| Q |
172 |
gcatcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgttactcgattgg |
271 |
Q |
| |
|
|| |||||||| || |||||||||||| |||| ||| | ||||| |||||||| || || ||| ||||||||||||| ||| || ||||| ||||| |
|
|
| T |
20119491 |
aaattaaagacctagtccgtgtctataaaccggacattgtaatcctcattgaaacattggtgaatggtaataaaatttcagatttatgctactctattgg |
20119590 |
T |
|
| Q |
272 |
ctttgatcattatttttcccttgatagtattggtagaag |
310 |
Q |
| |
|
|||||| || ||||||| |||| ||||||||||||| |
|
|
| T |
20119591 |
ttttgataatcatttttcagttgaccgtattggtagaag |
20119629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 313
Target Start/End: Complemental strand, 27647411 - 27647173
Alignment:
| Q |
75 |
ttttttatcggcaggacttggctcccaagcctgccgggagtcatgaatatcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttccatgca |
174 |
Q |
| |
|
|||||||| ||||| | ||||||||| ||||||| || | |||||||||||||||| |||||| || || || || || || |||||||||| | | |
|
|
| T |
27647411 |
ttttttattggcagagcctggctcccaggcctgccaggcgaaatgaatatcatagcttggaactgccgaggcttggggaacgttaaggcagttccgtcaa |
27647312 |
T |
|
| Q |
175 |
tcaaagaccttgtacgtgtctataaatcggatattcttatccttattgaaactttagttaataataataaaatttcaagtttgtgttactcgattggctt |
274 |
Q |
| |
|
| |||||| | || || ||||||||| |||| ||| | || |||||||||||| | |||||| |||||||||||| ||| || ||| | |||||||| |
|
|
| T |
27647311 |
taaaagacatggtccgagtctataaaccggacattgtaattcttattgaaactcttgttaatggaaataaaatttcagatttatgctacacaattggctt |
27647212 |
T |
|
| Q |
275 |
tgatcattatttttcccttgatagtattggtagaagtgg |
313 |
Q |
| |
|
|||| || |||| || ||||| | ||||| |||||||| |
|
|
| T |
27647211 |
tgataatcatttctcagttgatcgaattggcagaagtgg |
27647173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 35492158 - 35492285
Alignment:
| Q |
73 |
cattttttatcggcaggacttggctcccaagcctgccgggagtcatgaata--tcatagctttgaactgtcgtggtttaggtaatgtcgaggcagttcca |
170 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||||||||||| | ||||||| ||||| | ||| |||| || ||| |||||||||| |
|
|
| T |
35492158 |
cattttttatcggcagagcttggctcccgggcctgtcgggagtcatgaatatgtaatagcttggaactattttggcctaggaaacgtcaaggcagttccc |
35492257 |
T |
|
| Q |
171 |
tgcatcaaagaccttgtacgtgtctata |
198 |
Q |
| |
|
|| || ||| ||||||| ||||||||| |
|
|
| T |
35492258 |
tgtataaaataccttgtctgtgtctata |
35492285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University