View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_51 (Length: 226)
Name: NF11967_low_51
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 53880589 - 53880665
Alignment:
| Q |
18 |
agaaataggacataacacaaactacacttagaaaataagaagtcaccaaaaagaacaaatacaggttcaaccttgag |
94 |
Q |
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| T |
53880589 |
agaaataggacataacacaaactacacttagaaaataagaagtcaccaaaaagaacaaatacaggttcaaccttgag |
53880665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 53886703 - 53886779
Alignment:
| Q |
18 |
agaaataggacataacacaaactacacttagaaaataagaagtcaccaaaaagaacaaatacaggttcaaccttgag |
94 |
Q |
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| T |
53886703 |
agaaataggacataacacaaactacacttagaaaataagaagtcaccaaaaagaacaaataaaggttcaaccttgag |
53886779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 53880720 - 53880782
Alignment:
| Q |
146 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53880720 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcg |
53880782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 53886834 - 53886896
Alignment:
| Q |
146 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53886834 |
tcaacatgacataaaatcattaacacccaaaaacatcaatcacggtctgctggatcctgatcg |
53886896 |
T |
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