View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_6 (Length: 588)
Name: NF11967_low_6
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 46073865 - 46073282
Alignment:
| Q |
1 |
tgagggccatggcacacaatctcttcaacgtgggtccgtccccggaacggaggttatggggtttgggtcggtttgatggttttttggaggattttgatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46073865 |
tgagggccatggcacacaatctcttcaacgtgggtctgtccctggaatggagtttattgggtttgggtcggtttgatggttttttggaggattttgatgc |
46073766 |
T |
|
| Q |
101 |
gagtagcaggcgatacgtgttttgaaattcattcaagatggagtatagggtttggtctatgatgttgtgtggagatttggcgttgactttggtgattagc |
200 |
Q |
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| T |
46073765 |
gagtagcagacgatacgtgttttgaaattcattcgagatggagtatagagtttggtctatgatgttgtgtggagatttggcgttgactttggtgattagc |
46073666 |
T |
|
| Q |
201 |
ttttaattggtgttggtggtagttgggtggtgtt-ttttatgtttgagtgttccgcttatatatatgactttctttgtcatattgtttttgtcatatcgg |
299 |
Q |
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| T |
46073665 |
ttttaattggcgttggtggtagttgggtggtgtttttttatgtttgagtgttccgcttatatatatgactttctttgtcatattgtttctgtcatatcgg |
46073566 |
T |
|
| Q |
300 |
tttttgttcatct-----tatgcatagacttgactacatttagtaagattttggccacaagaagtggacccgtttaacccatcttgcagaggtaaaaccc |
394 |
Q |
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| T |
46073565 |
tctttgttcatcttatgctatgcatagacttgactacatttagtaagatttgggccacaagaagtggacccgtttaacccatcttgcagaggtaaaaccc |
46073466 |
T |
|
| Q |
395 |
taaaccttgtcttataaatacacctgcttgctcctagaaagaattcatgttttgaccaccgagaga---gtagtggtggtggtgccgtttgatccattgt |
491 |
Q |
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| T |
46073465 |
taaaccttgtcttataaatacacctgcttgctcctagaaagaattcatgttttgaccaccgagagagtggtggtggtggtggtgctgtttgatccattgt |
46073366 |
T |
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| Q |
492 |
attcttttaatcaagaaaattacactcgactaattgagtatgagggatcctctccattccttcatattttcgagtgtattttct |
575 |
Q |
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| T |
46073365 |
attcttttaatcaagaaaattacactcgagtaattgagtatgagggatcctctccattcattcatcttttcgagtgtattttct |
46073282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 531
Target Start/End: Complemental strand, 18385026 - 18384975
Alignment:
| Q |
480 |
ttgatccattgtattcttttaatcaagaaaattacactcgactaattgagta |
531 |
Q |
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| T |
18385026 |
ttgatccattgaatttttttaatcaaggaaattacactcgagtaatcgagta |
18384975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 516
Target Start/End: Original strand, 50941898 - 50941936
Alignment:
| Q |
478 |
gtttgatccattgtattcttttaatcaagaaaattacac |
516 |
Q |
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| T |
50941898 |
gtttgatccattgcattcttttaatcaagaaaattacac |
50941936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 32125357 - 32125406
Alignment:
| Q |
471 |
tggtgccgtttgatccattgtattcttttaatcaagaaaattacactcga |
520 |
Q |
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| T |
32125357 |
tggtgccttttgatccattgcattcttttaatctaggaaattacactcga |
32125406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 531
Target Start/End: Complemental strand, 11815100 - 11815037
Alignment:
| Q |
468 |
tggtggtgccgtttgatccattgtattcttttaatcaagaaaattacactcgactaattgagta |
531 |
Q |
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| T |
11815100 |
tggtggtgcagtttgatccattgcatttttttaatcaaagaaattacacttgagtgattgagta |
11815037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 531
Target Start/End: Complemental strand, 14011784 - 14011722
Alignment:
| Q |
469 |
ggtggtgccgtttgatccattgtattcttttaatcaagaaaattacactcgactaattgagta |
531 |
Q |
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|||||||| ||||||||||||| ||| |||||||||| |||||||||| || | |||||||| |
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| T |
14011784 |
ggtggtgcagtttgatccattgcatttttttaatcaaagaaattacacttgagtgattgagta |
14011722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 520
Target Start/End: Original strand, 32121209 - 32121259
Alignment:
| Q |
470 |
gtggtgccgtttgatccattgtattcttttaatcaagaaaattacactcga |
520 |
Q |
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| T |
32121209 |
gtggtgcagcttgatccattgcatttttttaatcaaggaaattacactcga |
32121259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 48542990 - 48542949
Alignment:
| Q |
1 |
tgagggccatggcacacaatctcttcaacgtgggtccgtccc |
42 |
Q |
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| T |
48542990 |
tgagggccatgacacacaatctcttcaacgtggatccatccc |
48542949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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