View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11967_low_9 (Length: 505)
Name: NF11967_low_9
Description: NF11967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11967_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 1959985 - 1959497
Alignment:
| Q |
1 |
tggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1959985 |
tggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagt |
1959886 |
T |
|
| Q |
101 |
atcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatat |
200 |
Q |
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| T |
1959885 |
atcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatat |
1959786 |
T |
|
| Q |
201 |
ttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataactttgtagcattccatcaagtaagaggacag |
300 |
Q |
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| T |
1959785 |
ttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattcaaataactttgtagcattccatcaagtaagaggacag |
1959686 |
T |
|
| Q |
301 |
cagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaagaccgattccca |
400 |
Q |
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| T |
1959685 |
cagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaagaccgattccca |
1959586 |
T |
|
| Q |
401 |
attcgaccgatctagtatagttttgactacttgtttacataggacgccttattcttccttcaaagtcaaaatgatagaccatttctatg |
489 |
Q |
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| T |
1959585 |
attcgaccaatctagtatagttttgactacttgtttacataggacgccttattctttcttcaaagtcaaaatgatagaccatttctatg |
1959497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 2023340 - 2023612
Alignment:
| Q |
1 |
tggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2023340 |
tggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagt |
2023439 |
T |
|
| Q |
101 |
atcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2023440 |
atcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcctttgccatat |
2023539 |
T |
|
| Q |
201 |
ttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataacttt |
273 |
Q |
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| T |
2023540 |
ttcaagattggaaatttctgatacacacaataaaggtggtttaacatgtatgcaatataattaaaataacttt |
2023612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 279 - 489
Target Start/End: Original strand, 2023807 - 2024015
Alignment:
| Q |
279 |
attccatcaagtaagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctga |
378 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| | || || |
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| T |
2023807 |
attccatcaagtcagaggacagcaacaattaagattatagggatacaaacctattttcttgaggactacaagaaccttgtgaacatcatg---tacccga |
2023903 |
T |
|
| Q |
379 |
ttataggtaagaccgattcccaattcgaccgatctagtatagttttgactacttgtttacataggacgccttattctt-ccttcaaagtcaaaatgatag |
477 |
Q |
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||||||| |||| ||||||||| | ||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||| ||| |
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| T |
2023904 |
ttatagggcagactgattcccaacttgactgatctagtatagttttgactacttgtttgcataggacaccttattcttcccttcaaaatcaaaatggtag |
2024003 |
T |
|
| Q |
478 |
accatttctatg |
489 |
Q |
| |
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| |||||||||| |
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| T |
2024004 |
atcatttctatg |
2024015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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