View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11968_high_11 (Length: 245)
Name: NF11968_high_11
Description: NF11968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11968_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35102699 - 35102920
Alignment:
| Q |
1 |
aattattagagtttgatttatacataaatgtatatgtatctctttttgtttcattta-----ttagaaatttaattttcaatttcacttatgtatgtgtt |
95 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35102699 |
aattattagagtttgatttatacaaaaatgtat--gtatctctttttgtttcatttaatttattagaaatttaattttcaatttcacttatgt----gtt |
35102792 |
T |
|
| Q |
96 |
gtagtttatggtatttgcttgctccgactctcgagtgagtccctctattatcctcaactttcaacctggtgaagctagctttcatggtccgaaacattgc |
195 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
35102793 |
ttagtttatggtatttgcttgctctgactctagagtgagtccctctattatcctgaactttcaacatggaga----agctttcatggtccgaaacattgc |
35102888 |
T |
|
| Q |
196 |
taacatggtccctccatttaatcaggtttact |
227 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| |
|
|
| T |
35102889 |
taacatggtccctacatttaatcaggtctact |
35102920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 35096896 - 35097029
Alignment:
| Q |
90 |
tgtgttgtagtttatggtatttgcttgctccgactctcgagtgagtccctctattatcctcaactttcaacctggtgaagctagctttcatggtccgaaa |
189 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
35096896 |
tgtgttgtagtttatggtatttgcttgttccgactctcgagtgagtccctctgttatcctgaactttcaacctggtga----agctttcatggttcgaaa |
35096991 |
T |
|
| Q |
190 |
cattgctaacatggtccctccatttaatcaggtttact |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35096992 |
cattgctaacatggtccctccatttaatcaggtctact |
35097029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 35110138 - 35110269
Alignment:
| Q |
92 |
tgttgtagtttatggtatttgcttgctccgactctcgagtgagtccctctattatcctcaactttcaacctggtgaagctagctttcatggtccgaaaca |
191 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
35110138 |
tgttgtagtttatggtatttgcttgttctgactctagagtgagtccctctattatcctgaactttcaacctggaga----agctttcatggtccgaaaca |
35110233 |
T |
|
| Q |
192 |
ttgctaacatggtccctccatttaatcaggtttact |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35110234 |
ttgctaacatggtccctccatttaatcaggtctact |
35110269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University