View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11968_high_2 (Length: 572)

Name: NF11968_high_2
Description: NF11968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11968_high_2
NF11968_high_2
[»] chr3 (30 HSPs)
chr3 (1-557)||(40495696-40496254)
chr3 (314-377)||(43339173-43339235)
chr3 (314-377)||(50610255-50610317)
chr3 (308-377)||(22605678-22605746)
chr3 (314-377)||(2218807-2218869)
chr3 (314-377)||(16464735-16464797)
chr3 (314-377)||(18411032-18411094)
chr3 (314-377)||(18762749-18762811)
chr3 (314-377)||(27126994-27127056)
chr3 (314-377)||(27324855-27324917)
chr3 (314-377)||(30042660-30042722)
chr3 (314-377)||(31312800-31312862)
chr3 (314-377)||(44842367-44842429)
chr3 (19-61)||(40470036-40470078)
chr3 (315-377)||(40906954-40907015)
chr3 (315-377)||(47912130-47912191)
chr3 (304-377)||(11122418-11122490)
chr3 (314-377)||(4232094-4232156)
chr3 (314-377)||(10826903-10826965)
chr3 (314-377)||(16009605-16009667)
chr3 (314-377)||(27331092-27331154)
chr3 (314-377)||(30439491-30439553)
chr3 (314-377)||(37219371-37219433)
chr3 (314-377)||(38236335-38236397)
chr3 (314-377)||(45170807-45170869)
chr3 (314-377)||(51721978-51722040)
chr3 (314-377)||(55412029-55412091)
chr3 (314-364)||(37786241-37786290)
chr3 (314-364)||(50547652-50547701)
chr3 (314-383)||(23020597-23020665)
[»] scaffold0115 (1 HSPs)
scaffold0115 (306-377)||(22777-22847)
[»] chr8 (21 HSPs)
chr8 (304-377)||(40303524-40303596)
chr8 (314-377)||(277573-277635)
chr8 (314-377)||(638214-638276)
chr8 (314-377)||(824020-824082)
chr8 (314-377)||(18956290-18956352)
chr8 (306-377)||(23346325-23346395)
chr8 (314-377)||(26950016-26950078)
chr8 (314-377)||(30555852-30555914)
chr8 (314-377)||(38060411-38060473)
chr8 (314-377)||(39858827-39858889)
chr8 (314-377)||(43694330-43694392)
chr8 (314-377)||(13140478-13140540)
chr8 (314-377)||(27913233-27913295)
chr8 (314-377)||(27959652-27959714)
chr8 (314-377)||(30111574-30111636)
chr8 (314-377)||(36192268-36192330)
chr8 (314-377)||(41545676-41545738)
chr8 (314-377)||(42646164-42646226)
chr8 (314-377)||(42736423-42736485)
chr8 (314-373)||(44256935-44256993)
chr8 (314-377)||(45408395-45408457)
[»] chr5 (14 HSPs)
chr5 (304-377)||(20545360-20545432)
chr5 (306-377)||(744757-744827)
chr5 (314-377)||(15421134-15421196)
chr5 (314-377)||(19665744-19665806)
chr5 (314-377)||(30130116-30130178)
chr5 (314-375)||(13304618-13304678)
chr5 (314-377)||(824003-824065)
chr5 (314-377)||(9592591-9592653)
chr5 (314-377)||(11985439-11985501)
chr5 (314-377)||(12500191-12500253)
chr5 (314-377)||(27019293-27019355)
chr5 (314-377)||(27551574-27551636)
chr5 (314-377)||(37271208-37271270)
chr5 (304-377)||(37939651-37939723)
[»] chr1 (13 HSPs)
chr1 (304-377)||(7153713-7153785)
chr1 (314-377)||(10773524-10773586)
chr1 (314-377)||(36308635-36308697)
chr1 (314-377)||(51087518-51087580)
chr1 (315-377)||(44511584-44511645)
chr1 (314-377)||(14487976-14488038)
chr1 (314-377)||(14536565-14536627)
chr1 (314-377)||(33705393-33705455)
chr1 (314-377)||(35955217-35955279)
chr1 (320-377)||(36731464-36731520)
chr1 (314-371)||(52405389-52405445)
chr1 (314-371)||(52406822-52406878)
chr1 (314-370)||(29648717-29648772)
[»] chr7 (21 HSPs)
chr7 (314-377)||(724658-724720)
chr7 (314-377)||(3415278-3415340)
chr7 (314-377)||(16274397-16274459)
chr7 (314-377)||(20120820-20120882)
chr7 (314-377)||(21816197-21816259)
chr7 (314-377)||(28588739-28588801)
chr7 (314-377)||(40014812-40014874)
chr7 (314-377)||(41337099-41337161)
chr7 (314-377)||(41857778-41857840)
chr7 (314-377)||(48606747-48606809)
chr7 (314-377)||(5373667-5373729)
chr7 (314-377)||(30759211-30759273)
chr7 (314-377)||(44521220-44521282)
chr7 (314-377)||(48684057-48684119)
chr7 (314-377)||(48951407-48951469)
chr7 (460-548)||(10934464-10934545)
chr7 (315-377)||(33245765-33245826)
chr7 (319-377)||(46554627-46554684)
chr7 (314-364)||(46935411-46935460)
chr7 (314-364)||(47504439-47504488)
chr7 (316-377)||(47908133-47908193)
[»] chr6 (9 HSPs)
chr6 (314-377)||(954803-954865)
chr6 (314-377)||(5687487-5687549)
chr6 (314-377)||(11153849-11153911)
chr6 (314-377)||(14104768-14104830)
chr6 (314-377)||(28579380-28579442)
chr6 (304-377)||(11836807-11836879)
chr6 (304-377)||(16918949-16919021)
chr6 (314-377)||(27783253-27783315)
chr6 (304-377)||(23573851-23573923)
[»] chr4 (18 HSPs)
chr4 (314-377)||(3035000-3035062)
chr4 (314-377)||(4653771-4653833)
chr4 (314-377)||(16665459-16665521)
chr4 (314-377)||(17361901-17361963)
chr4 (314-377)||(20786278-20786340)
chr4 (314-377)||(23418489-23418551)
chr4 (314-377)||(27958668-27958730)
chr4 (314-377)||(35825344-35825406)
chr4 (314-377)||(46718517-46718579)
chr4 (314-377)||(52448188-52448250)
chr4 (314-377)||(54920198-54920260)
chr4 (315-377)||(41040732-41040793)
chr4 (314-377)||(20342526-20342588)
chr4 (314-377)||(20353251-20353313)
chr4 (314-377)||(31291871-31291933)
chr4 (314-377)||(35045769-35045831)
chr4 (314-364)||(9368076-9368125)
chr4 (304-377)||(34073813-34073885)
[»] chr2 (13 HSPs)
chr2 (314-377)||(76806-76868)
chr2 (314-377)||(4737407-4737469)
chr2 (314-377)||(15153366-15153428)
chr2 (314-377)||(28391123-28391185)
chr2 (314-377)||(37724681-37724743)
chr2 (314-377)||(38281437-38281499)
chr2 (307-377)||(2291462-2291531)
chr2 (314-377)||(1054312-1054374)
chr2 (314-377)||(15399791-15399853)
chr2 (314-377)||(27550784-27550846)
chr2 (314-377)||(39068174-39068236)
chr2 (315-377)||(3906081-3906142)
chr2 (420-461)||(38552133-38552174)
[»] scaffold0075 (1 HSPs)
scaffold0075 (314-377)||(18474-18536)


Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 40496254 - 40495696
Alignment:
1 attgatgtattcataatattcatttcacaccacatgcatcatattagaaacttccaaccaattttatannnnnnnnnatnnnnnnntgaaattgaaccga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||       ||||||||||||||    
40496254 attgatgtattcataatattcatttcacaccacatgcatcatattagaaacttccaaccaattttatatttttttt-ataaaaaaatgaaattgaaccga 40496156  T
101 aaattttacatgaacgatattattttcttaaaattgaatacattctagcagtcaaaaattaattatgatccactgannnnnnnnnnnnn---gagtaaat 197  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||| ||    
40496155 atattttacatgaacgatattattttcttaaaattgaatacattctagcagtcaaaaattaattatgatccactgatttttattttttttttgagtacat 40496056  T
198 gatccagtgaattattatttttcaaggaaaaaatatatatacatatgctccttttctattcataagtaatggattcatcgccatgttagataagcagtgt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40496055 gatccagtgaattattatttttcaaggaaaaaatatatatacatatgctccttttctattcataagtaatggattcatcgccatgttagataagcagtgt 40495956  T
298 acttgatagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattcagaaattaattgatatgtttc 397  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
40495955 atttgatagcttatatcaattaaaatttcacataaaagtttctttcatctgaatatccttaaatctaacaattatattcagaaattaattgatatgtttc 40495856  T
398 ttgcattccagaatgtgaatcaaaactcatccccttcattccaatttcttcatatacttgttttatcactttcttcgtctttcttcttatgattgccatc 497  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40495855 ttgcattccagaatgtgaatccaaactcatccccttcattccaatttcttcatatacttgttttatcactttcttcgtctttcttcttatgattgccatc 40495756  T
498 gatttttattgccaatccaaaagtatctccttctttccaatcgcatctcttcgttctctg 557  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
40495755 gatttttattgtcaatccaaaagtatctccttctttccaatcgtatctcttcgttctctg 40495696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 43339235 - 43339173
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||||||| || |||||||||    
43339235 caattaaaatttcacatcaaa-tttctttcatctgaatatccttaaatttatcagttatattca 43339173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 50610317 - 50610255
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| ||||||||||||    
50610317 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcaattatattca 50610255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 377
Target Start/End: Complemental strand, 22605746 - 22605678
Alignment:
308 ttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||| ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
22605746 ttataacaattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 22605678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 2218869 - 2218807
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
2218869 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 2218807  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 16464797 - 16464735
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
16464797 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 16464735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 18411094 - 18411032
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
18411094 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 18411032  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 18762811 - 18762749
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
18762811 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 18762749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 27127056 - 27126994
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
27127056 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 27126994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 27324855 - 27324917
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
27324855 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 27324917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 30042660 - 30042722
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
30042660 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 30042722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 31312800 - 31312862
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
31312800 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 31312862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 44842367 - 44842429
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
44842367 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 44842429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 40470078 - 40470036
Alignment:
19 ttcatttcacaccacatgcatcatattagaaacttccaaccaa 61  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
40470078 ttcatttcacaccacatgcattacattagaaacttccaaccaa 40470036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 40907015 - 40906954
Alignment:
315 aattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
40907015 aattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 40906954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 47912130 - 47912191
Alignment:
315 aattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
47912130 aattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 47912191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 11122490 - 11122418
Alignment:
304 tagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| | |||||||||||||| || ||| ||||||| |||||||| |||||||||||| || |||||||||    
11122490 tagcttagaacaattaaaatttcatatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 11122418  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 4232094 - 4232156
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||| ||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
4232094 caattaaaagttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 4232156  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 10826903 - 10826965
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||| |||||| ||| ||| ||||||||||||||||||||||||||||| || ||| |||||    
10826903 caattataatttcgcatcaaa-tttcttttatctgaatatccttaaatttatcagttacattca 10826965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 16009667 - 16009605
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||| |||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
16009667 caattaaaattttacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 16009605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 27331092 - 27331154
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| | |||||||||| || |||||||||    
27331092 caattaaaatttcacatcaaa-tttctttcatctgaatgttcttaaatttatcagttatattca 27331154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 30439491 - 30439553
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||||| || ||| ||||||| |||||||| |||||||||||| || |||||||||    
30439491 caattaaaatttcatatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 30439553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 37219371 - 37219433
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| || ||||||||| || |||||||||    
37219371 caattaaaatttcacatcaaa-tttctttcatctgaatgtcattaaatttatcagttatattca 37219433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 38236397 - 38236335
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| |  |||||||||    
38236397 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatctgttatattca 38236335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 45170869 - 45170807
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||  | |||||||||    
45170869 caattaaaatttcacatcaaa-tttctttcatctgaatttccttaaatttattagttatattca 45170807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 51721978 - 51722040
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
51721978 caattaaaatttcacattaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 51722040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 55412091 - 55412029
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
55412091 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcatttacattca 55412029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 37786290 - 37786241
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaattta 364  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||    
37786290 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaattta 37786241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 50547652 - 50547701
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaattta 364  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||    
50547652 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaattta 50547701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 23020665 - 23020597
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattcagaaatt 383  Q
    |||||||||||||| || ||| |||| || |||||||| |||||||||||| || ||||||||| |||||    
23020665 caattaaaatttcatatcaaa-tttcattcatctgaatgtccttaaatttatcagttatattcataaatt 23020597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 377
Target Start/End: Complemental strand, 22847 - 22777
Alignment:
306 gcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
22847 gcttataacaattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 22777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 40303524 - 40303596
Alignment:
304 tagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| | ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
40303524 tagcttagaacaattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 40303596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 277635 - 277573
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
277635 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 277573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 638214 - 638276
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
638214 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 638276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 824020 - 824082
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
824020 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 824082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 18956352 - 18956290
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
18956352 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 18956290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 23346325 - 23346395
Alignment:
306 gcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| ||||||||||||||||| ||| ||||||| | |||||| |||||||||||| || |||||||||    
23346325 gcttataacaattaaaatttcacatcaaa-tttctttcacctgaatgtccttaaatttatcagttatattca 23346395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 26950016 - 26950078
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
26950016 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 26950078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 30555852 - 30555914
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
30555852 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 30555914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 38060411 - 38060473
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
38060411 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 38060473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 39858889 - 39858827
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
39858889 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 39858827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 43694330 - 43694392
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
43694330 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 43694392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 13140478 - 13140540
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| ||||| || |||||||||||| || |||||||||    
13140478 caattaaaatttcacatcaaa-tttctttcatctggatgtccttaaatttatcagttatattca 13140540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 27913295 - 27913233
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||||| || ||| ||||||| |||||||| |||||||||||| || |||||||||    
27913295 caattaaaatttcatatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 27913233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 27959714 - 27959652
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||||| || ||| ||||||| |||||||| |||||||||||| || |||||||||    
27959714 caattaaaatttcatatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 27959652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 30111636 - 30111574
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||| |||| || |||||||||    
30111636 caattaaaatttcacatcaaa-tttctttgatctgaatgtccttaagtttatcatttatattca 30111574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 36192330 - 36192268
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| || |||||||||||||||||| |  |||||||||    
36192330 caattaaaatttcacatcaaa-tttctttcatatgaatatccttaaatttatcggttatattca 36192268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 41545738 - 41545676
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||| | || |||||||||    
41545738 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaattaatcagttatattca 41545676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 42646226 - 42646164
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
42646226 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 42646164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 42736485 - 42736423
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| || ||||||||| || |||||||||    
42736485 caattaaaatttcacatcaaa-tttctttcatctgaatgtctttaaatttatcagttatattca 42736423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 44256993 - 44256935
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattata 373  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||    
44256993 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttata 44256935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 45408395 - 45408457
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
45408395 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 45408457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 20545360 - 20545432
Alignment:
304 tagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| | ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
20545360 tagcttagaacaattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 20545432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 744757 - 744827
Alignment:
306 gcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
744757 gcttataacaattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 744827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 15421196 - 15421134
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
15421196 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 15421134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 19665806 - 19665744
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
19665806 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 19665744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 30130116 - 30130178
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
30130116 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 30130178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 375
Target Start/End: Original strand, 13304618 - 13304678
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatatt 375  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||    
13304618 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatatt 13304678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 824003 - 824065
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| | |||||||||| || |||||||||    
824003 caattaaaatttcacatcaaa-tttctttcatctgaatgtacttaaatttatcagttatattca 824065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 9592653 - 9592591
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||| |||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
9592653 caattaaaattttacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 9592591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 11985501 - 11985439
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||| ||| |||||||| |||||||||||| || |||||||||    
11985501 caattaaaatttcacatcaaa-tttatttcatctgaatttccttaaatttatcagttatattca 11985439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 12500253 - 12500191
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| ||| |||| |||||||||||| || |||||||||    
12500253 caattaaaatttcacatcaaa-tttctttcatccgaatgtccttaaatttatcagttatattca 12500191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 27019293 - 27019355
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||| ||| |||||||| |||||||||||| || |||||||||    
27019293 caattaaaatttcacatcaaa-tttatttcatctgaatgtccttaaatttatcagttatattca 27019355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 27551636 - 27551574
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
27551636 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 27551574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 37271270 - 37271208
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||| ||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
37271270 caattaaaatttcgcatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 37271208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 37939651 - 37939723
Alignment:
304 tagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| | ||||||||||||||||| ||| ||||||| |||||||  | |||||||||| || |||||||||    
37939651 tagcttagaacaattaaaatttcacatcaaa-tttctttcatctgaacgttcttaaatttatcagttatattca 37939723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 7153785 - 7153713
Alignment:
304 tagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| | ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
7153785 tagcttagaacaattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 7153713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 10773586 - 10773524
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
10773586 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 10773524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 36308697 - 36308635
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
36308697 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 36308635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 51087580 - 51087518
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
51087580 caattaaaatttcacatcaaa-tttctttaatctgaatgtccttaaatttatcagttatattca 51087518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 44511584 - 44511645
Alignment:
315 aattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
44511584 aattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttaccagttatattca 44511645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 14487976 - 14488038
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||| |||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
14487976 caattaaattttcacatcaaa-tttctttaatctgaatgtccttaaatttatcagttatattca 14488038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 14536565 - 14536627
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||| |||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
14536565 caattaaattttcacatcaaa-tttctttaatctgaatgtccttaaatttatcagttatattca 14536627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 33705455 - 33705393
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||| |||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
33705455 caattaaaattttacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 33705393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 35955279 - 35955217
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| |||||||  ||||||| |||||||||||| || |||||||||    
35955279 caattaaaatttcacatcaaa-tttctttcttctgaatgtccttaaatttatcagttatattca 35955217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 36731520 - 36731464
Alignment:
320 aaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
36731520 aaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 36731464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 52405445 - 52405389
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaatta 371  Q
    ||||| ||||||||||| ||| ||||||| |||||||| |||||||||||| ||||||    
52405445 caattcaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcaatta 52405389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 52406878 - 52406822
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaatta 371  Q
    ||||| ||||||||||| ||| ||||||| |||||||| |||||||||||| ||||||    
52406878 caattcaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcaatta 52406822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 29648717 - 29648772
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaatt 370  Q
    ||||||||||||||||| |||| |||||| || ||||| |||||||||||| |||||    
29648717 caattaaaatttcacatcaaag-ttctttcatttgaatgtccttaaatttatcaatt 29648772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 724658 - 724720
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
724658 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 724720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 3415278 - 3415340
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
3415278 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 3415340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 16274397 - 16274459
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
16274397 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 16274459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 20120882 - 20120820
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
20120882 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 20120820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 21816259 - 21816197
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
21816259 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 21816197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 28588739 - 28588801
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
28588739 caattaaaatttcacatcaaa-tttctttcatctgaatttccttaaatttatcagttatattca 28588801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 40014812 - 40014874
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
40014812 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 40014874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 41337161 - 41337099
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
41337161 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 41337099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 41857778 - 41857840
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
41857778 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 41857840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 48606747 - 48606809
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||| |||| ||| |||||||||||||||| |||||||||||| || |||||||||    
48606747 caattaaaatttgacatcaaa-tttcttttatctgaatgtccttaaatttatcagttatattca 48606809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 5373667 - 5373729
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| || ||||| |||||||||||| || |||||||||    
5373667 caattaaaatttcacatcaaa-tttctttcatgtgaatgtccttaaatttatcagttatattca 5373729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 30759211 - 30759273
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
30759211 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 30759273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 44521220 - 44521282
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
44521220 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 44521282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 48684119 - 48684057
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| ||| |||| |||||||||||| || |||||||||    
48684119 caattaaaatttcacatcaaa-tttctttcatccgaatgtccttaaatttatcagttatattca 48684057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 48951407 - 48951469
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| || ||||||||| || |||||||||    
48951407 caattaaaatttcacatcaaa-tttctttcatctgaatgtcattaaatttatcagttatattca 48951469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 548
Target Start/End: Complemental strand, 10934545 - 10934464
Alignment:
460 ttatcactttcttcgtctttcttcttatgattgccatcgatttttattgccaatccaaaagtatctccttctttccaatcgcatctctt 548  Q
    |||||||||||||| |||||||| ||   ||||||||||||       ||||||||||||||||||||||| || |||| |||||||||    
10934545 ttatcactttcttcttctttcttgttgcaattgccatcgat-------gccaatccaaaagtatctccttcatttcaattgcatctctt 10934464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 33245765 - 33245826
Alignment:
315 aattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||| ||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
33245765 aattaaaatttcccatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 33245826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 46554627 - 46554684
Alignment:
319 aaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
46554627 aaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 46554684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 46935411 - 46935460
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaattta 364  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||    
46935411 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaattta 46935460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 47504488 - 47504439
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaattta 364  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||    
47504488 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaattta 47504439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 47908133 - 47908193
Alignment:
316 attaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||| ||| ||| ||| |||||||| |||||||||||| || |||||||||    
47908133 attaaaatttcacatcaaatttt-tttcatctgaatgtccttaaatttatcagttatattca 47908193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 954803 - 954865
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||||||||||| || |||||||||    
954803 caattaaaatttcacatcaaa-tttattttatctgaatgtccttaaatttatcagttatattca 954865  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 5687487 - 5687549
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
5687487 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 5687549  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 11153849 - 11153911
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
11153849 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 11153911  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 14104830 - 14104768
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
14104830 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 14104768  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 28579442 - 28579380
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
28579442 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 28579380  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 11836807 - 11836879
Alignment:
304 tagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| | ||||||||||||||||| ||| ||||||| |||||||| | |||||||||| || |||||||||    
11836807 tagcttagaacaattaaaatttcacatcaaa-tttctttcatctgaatgttcttaaatttatcagttatattca 11836879  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 16919021 - 16918949
Alignment:
304 tagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| | ||||||||||||||||| ||| ||||||| |||||||| | |||||||||| || |||||||||    
16919021 tagcttagaacaattaaaatttcacatcaaa-tttctttcatctgaatgttcttaaatttatcagttatattca 16918949  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 27783315 - 27783253
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| | |||||| |||||||||||| || |||||||||    
27783315 caattaaaatttcacatcaaa-tttctttcaactgaatgtccttaaatttatcagttatattca 27783253  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 23573923 - 23573851
Alignment:
304 tagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| | ||||||||||||||||| ||| ||||||| |||||||  | |||||||||| || |||||||||    
23573923 tagcttagaacaattaaaatttcacatcaaa-tttctttcatctgaaagtacttaaatttatcagttatattca 23573851  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 3035000 - 3035062
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
3035000 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 3035062  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 4653833 - 4653771
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
4653833 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 4653771  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 16665521 - 16665459
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
16665521 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 16665459  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 17361963 - 17361901
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
17361963 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcacttatattca 17361901  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 20786278 - 20786340
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
20786278 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 20786340  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 23418489 - 23418551
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
23418489 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 23418551  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 27958668 - 27958730
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||  |||||||||||    
27958668 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttataaattatattca 27958730  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 35825406 - 35825344
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
35825406 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 35825344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 46718579 - 46718517
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
46718579 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 46718517  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 52448250 - 52448188
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
52448250 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 52448188  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 54920260 - 54920198
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
54920260 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 54920198  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 41040732 - 41040793
Alignment:
315 aattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
41040732 aattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 41040793  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 20342526 - 20342588
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||| ||| |||||||| |||||||||||| || |||||||||    
20342526 caattaaaatttcacatcaaa-tttatttcatctgaatgtccttaaatttatcagttatattca 20342588  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 20353251 - 20353313
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||| ||| |||||||| |||||||||||| || |||||||||    
20353251 caattaaaatttcacatcaaatttt-tttcatctgaatgtccttaaatttatcagttatattca 20353313  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 31291871 - 31291933
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||||| || || |||||||||    
31291871 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatctatcagttatattca 31291933  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 35045831 - 35045769
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||| ||| |||||||| |||||||||||| || |||||||||    
35045831 caattaaaatttcacatcaaa-tttatttcatctgaatgtccttaaatttatcagttatattca 35045769  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 9368076 - 9368125
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaattta 364  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||||||||||    
9368076 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaattta 9368125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 34073885 - 34073813
Alignment:
304 tagcttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||| | ||||||||||| ||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
34073885 tagcttagaacaattaaaattacacatcaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 34073813  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 76806 - 76868
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
76806 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 76868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 4737407 - 4737469
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
4737407 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 4737469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 15153428 - 15153366
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
15153428 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 15153366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 28391123 - 28391185
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
28391123 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 28391185  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 37724681 - 37724743
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
37724681 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 37724743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 38281437 - 38281499
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || |||||||||    
38281437 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttatattca 38281499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 2291462 - 2291531
Alignment:
307 cttatatcaattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||| ||||||||||||||||| ||| || |||| |||||||| |||||||||||| || |||||||||    
2291462 cttataacaattaaaatttcacatcaaa-ttcctttcatctgaatgtccttaaatttatcagttatattca 2291531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 1054312 - 1054374
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||| |||||| || |||||||||    
1054312 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttgaatttatcagttatattca 1054374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 15399853 - 15399791
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||| ||| |||||||| |||||||||||| || |||||||||    
15399853 caattaaaatttcacatcaaatttt-tttcatctgaatgtccttaaatttatcagttatattca 15399791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 27550784 - 27550846
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
27550784 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 27550846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 39068174 - 39068236
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| || ||||| |||||||||||| || |||||||||    
39068174 caattaaaatttcacattaaa-tttctttcatttgaatgtccttaaatttatcagttatattca 39068236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 3906081 - 3906142
Alignment:
315 aattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    |||||||||||||||| ||| ||||||| |||||| | |||||||||||| || |||||||||    
3906081 aattaaaatttcacatcaaa-tttctttcatctgattgtccttaaatttatcagttatattca 3906142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 38552133 - 38552174
Alignment:
420 aaactcatccccttcattccaatttcttcatatacttgtttt 461  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
38552133 aaacacatccccttcgttctaatttcttcatatacttgtttt 38552174  T

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Target: scaffold0075 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 18474 - 18536
Alignment:
314 caattaaaatttcacataaaagtttcttttatctgaatatccttaaatttaacaattatattca 377  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||| || ||| |||||    
18474 caattaaaatttcacatcaaa-tttctttcatctgaatgtccttaaatttatcagttacattca 18536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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