View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11968_high_3 (Length: 344)
Name: NF11968_high_3
Description: NF11968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11968_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 18199573 - 18199890
Alignment:
| Q |
1 |
agacaaaccaataccagatgacaaagttgaccttgaagttgtatgaggatacataaaggactgttgcaaattagaagcatagcaagaattttgaggatag |
100 |
Q |
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| T |
18199573 |
agacaaaccaataccagatgacaaagttgaccttgaagttgtatgaggatacataaaggactgttgcaaattagaagcatagcaagaattttgaggatag |
18199672 |
T |
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| Q |
101 |
ttttggtgatgttgttgtgtctcaaaagaca---aagaagaagaattagttaatgatgcagggctatttttggtaagtgatgaagcattattaatattat |
197 |
Q |
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| T |
18199673 |
ttttggtgatgttgttgtgtctcaaaagacaaagaagaagaagaattagttaatgatgcagggctatttttggtaagtgatgaagcattattaatattat |
18199772 |
T |
|
| Q |
198 |
ttgtatttgttgttgttgctgttttaacaacttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggata |
297 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18199773 |
ttgtat---ttgttgttgctgttttaacaacttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggata |
18199869 |
T |
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| Q |
298 |
tgcttcttttgagcatctcca |
318 |
Q |
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| T |
18199870 |
tgcttcttttgagcatctcca |
18199890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 52052087 - 52051986
Alignment:
| Q |
217 |
tgttttaacaacttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctc |
316 |
Q |
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| T |
52052087 |
tgttttcaaaacttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctc |
52051988 |
T |
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| Q |
317 |
ca |
318 |
Q |
| |
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|| |
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| T |
52051987 |
ca |
52051986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 7246548 - 7246637
Alignment:
| Q |
229 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctcca |
318 |
Q |
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| T |
7246548 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctcca |
7246637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 42092014 - 42091961
Alignment:
| Q |
229 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagta |
282 |
Q |
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||||||||||||||||||||||||| | || | ||||||||||||||||||||| |
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| T |
42092014 |
ttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagta |
42091961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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