View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11968_high_4 (Length: 342)
Name: NF11968_high_4
Description: NF11968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11968_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 40496534 - 40496227
Alignment:
| Q |
21 |
aagaatgcacttaacaaattaaagttgatttatgcatggattatttatgttaatgacctctataaatggattaattgagattttataacttcacttaaga |
120 |
Q |
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| T |
40496534 |
aagaatgcacttaacaaattaaagttgatttatgcattgattatttatgttaatgacctctataaatggattaattgagattttataacttcacttaaga |
40496435 |
T |
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| Q |
121 |
ctccactgattagatttgggttttcatttaccataannnnnnnatacttataaaagaaggaaagaaactgagcatgtcttttgtttttactttttagcat |
220 |
Q |
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| T |
40496434 |
ctccactgattagatttgggttttcatttaccataatttttttatacttataaaagaaggaaagaaactgagcatgtcttttctttttactttttagcat |
40496335 |
T |
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| Q |
221 |
cagtttcattgacgtttgcattttaccatctccgttcgcactatgatccaatcatatcaaataaaatcatgactaactttattgatgtattcataatatt |
320 |
Q |
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| T |
40496334 |
cagtttcattgacgtttgcattttaccatctccgttcgcactatgatccaatcatatcaaataaaatcatgactaactttattgatgtattcataatatt |
40496235 |
T |
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| Q |
321 |
catctcac |
328 |
Q |
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||| |||| |
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| T |
40496234 |
catttcac |
40496227 |
T |
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