View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11968_high_6 (Length: 305)
Name: NF11968_high_6
Description: NF11968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11968_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 48358173 - 48357904
Alignment:
| Q |
11 |
caaaggatggtctagtggatggagttccatcccaacaaaggcgtataaggtcaatcaattctcccaaatgctcaccatcatcccttgacggaagtgtagg |
110 |
Q |
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| T |
48358173 |
caaaggatggtctagtggatggagttccatcccaacaaaggcgtataaggtcaatcaattctcccaaatgctcaccatcatcccttgacggaagtgtagg |
48358074 |
T |
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| Q |
111 |
ccgcagcttaccctctaccacttccatagcaatctaacaacgtattcataaagaaaaatgttacaattaaaaagagtaagactttcttctagttttatag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48358073 |
ccgcagcttaccctctaccacttccatagcaatctaacaacgtattcataaataaaaatgttacaattaaaaagagtaagactttcttctagttttatag |
48357974 |
T |
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| Q |
211 |
ccaagaaattataacaagaattgctcatgatcaatatgatgatgatacgtaccttggcaggaccatattctgtctcaatgt |
291 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48357973 |
ccaagaaattat-------attgctcatgatcaatatgatgatga----taccttggcaggaccatattctgtctcaatgt |
48357904 |
T |
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