View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11968_low_1 (Length: 1155)

Name: NF11968_low_1
Description: NF11968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11968_low_1
NF11968_low_1
[»] chr6 (5 HSPs)
chr6 (19-1155)||(19746789-19747932)
chr6 (1035-1087)||(33568839-33568891)
chr6 (1025-1087)||(33576015-33576077)
chr6 (307-401)||(5978151-5978245)
chr6 (313-401)||(33568012-33568100)
[»] chr5 (4 HSPs)
chr5 (307-633)||(23085864-23086190)
chr5 (1030-1155)||(23086632-23086757)
chr5 (830-883)||(23086420-23086473)
chr5 (743-785)||(23086318-23086360)
[»] chr7 (8 HSPs)
chr7 (1043-1155)||(23999555-23999667)
chr7 (307-454)||(15507858-15508005)
chr7 (1038-1138)||(24021626-24021726)
chr7 (318-461)||(26235981-26236124)
chr7 (1032-1074)||(24016641-24016683)
chr7 (1024-1074)||(26237458-26237508)
chr7 (1024-1074)||(26256619-26256669)
chr7 (349-402)||(26255963-26256016)
[»] chr8 (9 HSPs)
chr8 (318-439)||(11345954-11346075)
chr8 (832-908)||(11345431-11345507)
chr8 (832-908)||(11359309-11359385)
chr8 (1040-1155)||(11338671-11338786)
chr8 (833-908)||(11338905-11338980)
chr8 (1040-1155)||(11345196-11345311)
chr8 (1040-1155)||(11359074-11359189)
chr8 (1044-1155)||(11339514-11339625)
chr8 (376-427)||(11359865-11359916)
[»] chr3 (4 HSPs)
chr3 (1025-1155)||(36339960-36340090)
chr3 (318-466)||(36339250-36339398)
chr3 (1025-1090)||(25901439-25901504)
chr3 (1025-1075)||(25915472-25915522)
[»] scaffold0707 (2 HSPs)
scaffold0707 (1035-1087)||(5233-5285)
scaffold0707 (313-401)||(4406-4494)
[»] chr4 (8 HSPs)
chr4 (342-478)||(23839864-23840000)
chr4 (1024-1085)||(23847337-23847398)
chr4 (839-899)||(3557376-3557436)
chr4 (844-898)||(3565399-3565453)
chr4 (1025-1075)||(10571451-10571501)
chr4 (853-898)||(1686646-1686691)
chr4 (1037-1090)||(10467900-10467953)
chr4 (1037-1090)||(10482038-10482091)
[»] scaffold0649 (1 HSPs)
scaffold0649 (313-459)||(4592-4738)


Alignment Details
Target: chr6 (Bit Score: 1046; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 1046; E-Value: 0
Query Start/End: Original strand, 19 - 1155
Target Start/End: Complemental strand, 19747932 - 19746789
Alignment:
Q  19 ctattactatactactcttatcttccagcatcagactccatcaggattggcttcaatattcatcacagagcaattttcgtttattaaacaaaaaatattc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19747932 ctattactatactactcttatcttccagcatcagactccatcaggattggcttcaatattcaccacagagcaattttcgtttattaaacaaaaaatattc 19747833  T
Q  119 gtagatcttcacaccttttttatttgttttggttcatataaatgtgcggcgtgcaaatttagataccaacatactttacatattcagata-------tat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       |||    
T  19747832 gtagatcttcacaccttttttatttgttttggttcatataaatgtgcggcgtgcaaatttagataccatcatactttacatattcagatacacttcatat 19747733  T
Q  212 aaatttagggttgagaagcgtcacagctctgatggagatccttcaggttaagaagcgtggtcaatccgactcacaacagctaacggtgcccttcgttccc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747732 aaatttagggttgagaagcgtcacagctctgatggagatccttcaggttaagaagcgtggtcaatccgactcacaacagctaacggtgcccttcgttccc 19747633  T
Q  312 gacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcga 411  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19747632 gacgaacttatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgtgtgagcaagtcatggaactctctcatcaatgattcga 19747533  T
Q  412 ccttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcacaccaccaactttgaactatcctatcagtagtgtagagtccttccc 511  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19747532 ccttcgtacaaaaacacctcaagaagtcttcacaaaatccacacatcatactcacaccaccaactttgaaatatcctatcagtagtgtagagtccttccc 19747433  T
Q  512 cgtgagtcgtttactcgagaatccttcaaatactgtttttggtgacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaatggattg 611  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  19747432 cgtgagtcgtttactcgagaatccttcaatcactgtttttggtgacaatttccatgatttgaatgacacttgtcaggttattggttcctgcaatggattg 19747333  T
Q  612 ttttgcttgattttccattctctccataggaagtatacaaaatactggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactt 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747332 ttttgcttgattttccattctctccataggaagtatacaaaatactggttttgtttatggaatcctgccacgagaacaatatctgaagaattagggactt 19747233  T
Q  712 tccgatgctacaacacttcatcagaaactttcaagttcggttttggttgtgatatttcaacaggaacttacaagttggtggcgtatcgggcagaagaaga 811  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19747232 tccgatgctacaacacttcatcagaaactttcaagttcggttttggttgtgatatttcaacaggaacttacaagttggtggcatatcgggcagaagaaga 19747133  T
Q  812 tgatgcgaaccacaacggttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcctatt 911  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747132 tgatgcgaaccacagcggttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T
Q  912 ggatgtattcaattcaatcgaaataacaatggcgtgcatttaagtggcaagattaattggttggttattcgcaactatttttgtgcttcttatcattacg 1011  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747032 ggatgtattcaaatcaatcgaaataacaatggcgtgcatttaagtggcaagattaattggttggttattcgcaactatttttgtgcttcttatcattacg 19746933  T
Q  1012 aatgtatgaattatgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtccc 1111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  19746932 aatgtatgaattatgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctgccatttggttttgatgaagtccc 19746833  T
Q  1112 acactttcagccaactcttcatgttctgatggactgcctttgct 1155  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19746832 acactttcagccaactcttcatgttctgatggactgcctttgct 19746789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1035 - 1087
Target Start/End: Original strand, 33568839 - 33568891
Alignment:
Q  1035 tttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 1087  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  33568839 tttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgct 33568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1025 - 1087
Target Start/End: Original strand, 33576015 - 33576077
Alignment:
Q  1025 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 1087  Q
    ||||||| ||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  33576015 tgttgagaaatgtgtgattgtttcgcttgatcttttgacagagacatacacacaatttttgct 33576077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 5978151 - 5978245
Alignment:
Q  307 ttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc 401  Q
    |||| ||||| |||||||  ||||||||||| || |||| |||||||||||||   | ||| || ||||||| ||||||||||||| ||||||||    
T  5978151 ttcctgacgaactcatcgtcgaaatcctatcgttccttagcgtgaaaaccatcgcacgattcaagtgcgtgaacaagtcatggaacactctcatc 5978245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 33568012 - 33568100
Alignment:
Q  313 acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc 401  Q
    |||| ||||| || |||||||| || ||||||| |||||| |||||||  ||||| || ||||| ||||| ||||||||||| ||||||    
T  33568012 acgaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatc 33568100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 6e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 307 - 633
Target Start/End: Original strand, 23085864 - 23086190
Alignment:
Q  307 ttcccgacgagctcatcgcagaaatcct-atcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatg 405  Q
    |||||||||| ||||| || |||||||| || ||| ||||||  |||||| |||  || ||| |||||||| ||||||||||||||| ||||| ||   |    
T  23085864 ttcccgacgaactcattgccgaaatccttattctt-cttaacccgaaaacaatcgcgctattcaaatgcgtaagcaagtcatggaacactctcgtctccg 23085962  T
Q  406 attcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcacaccaccaactttgaactatcctatcagtagtgtagagtc 505  Q
    || | | |||| || | || || || |||||||| |||||||||||||   ||||||||||||||| ||||| ||| || |||||||||| ||| || ||    
T  23085963 atccaatcttcataaagaatcatcttaagaagtcatcacaaaacccacgtctcatactcacaccactaacttcgaagtaccctatcagtaatgtcgaatc 23086062  T
Q  506 cttccccgtgagtcgtttactcgagaatccttcaaatactgtttttggtgacaatttacatgattcgaatgatacttgtcaggttgttggttcctgcaat 605  Q
    |||| | ||||||||||||||||||||| |||| |  | |||||  ||||||||||  ||||  ||  | || || ||||| ||||||||||||||||||    
T  23086063 cttctctgtgagtcgtttactcgagaattcttcgatcattgtttccggtgacaattgccatggatcagaggacacatgtcatgttgttggttcctgcaat 23086162  T
Q  606 ggattgttttgcttgattttccattctc 633  Q
    |||||| |||||||| ||||||||||||    
T  23086163 ggattgctttgcttgcttttccattctc 23086190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1030 - 1155
Target Start/End: Original strand, 23086632 - 23086757
Alignment:
Q  1030 agcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactct 1129  Q
    |||| ||||| |||||||| |||||||| || || ||||||||||  || || ||||| ||    ||||||||||| || ||| | | ||||||| ||||    
T  23086632 agcagtttgtcattgtttcgcttgatctatcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccagaatatcagccatctct 23086731  T
Q  1130 tcatgttctgatggactgcctttgct 1155  Q
    ||||||||||| ||||||||||||||    
T  23086732 tcatgttctgaaggactgcctttgct 23086757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 830 - 883
Target Start/End: Original strand, 23086420 - 23086473
Alignment:
Q  830 ttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaa 883  Q
    |||||||| | || |||||||||||||||||||  |||||||||||||||||||    
T  23086420 ttcatggaaatgtgaggtcagaattttcagttttggtgataattgttggagaaa 23086473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 743 - 785
Target Start/End: Original strand, 23086318 - 23086360
Alignment:
Q  743 caagttcggttttggttgtgatatttcaacaggaacttacaag 785  Q
    |||||||  ||||||||||||||||||||| ||||||||||||    
T  23086318 caagttcacttttggttgtgatatttcaaccggaacttacaag 23086360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1043 - 1155
Target Start/End: Complemental strand, 23999667 - 23999555
Alignment:
Q  1043 tgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctgatg 1142  Q
    |||||||||| |||||| |||  | |||||||  ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||| | |||    
T  23999667 tgtttcccttaatcttttgaccaatacatacatgcaatttttgctacctcctagttttgatgaagtcccacactttcagccaactcttcatgttttcatg 23999568  T
Q  1143 gactgcctttgct 1155  Q
    |||| ||||||||    
T  23999567 gactacctttgct 23999555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 307 - 454
Target Start/End: Original strand, 15507858 - 15508005
Alignment:
Q  307 ttcccgacgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatga 406  Q
    |||||||||||||||| || ||| |||||||||| |||||| | ||||||||| ||||| | |||||| ||||||||||||||||  |||||||   |||    
T  15507858 ttcccgacgagctcatagccgaagtcctatccttccttaacataaaaaccatcgtgcaactcaaatgcttgagcaagtcatggaaagctctcatatctga 15507957  T
Q  407 ttcgaccttcgtacaaaaacacctcaagaagtcttcacaaaacccaca 454  Q
    | | |||||| |  |||| ||||| |||||||| |||||||| |||||    
T  15507958 tccaaccttcatcgaaaagcaccttaagaagtcgtcacaaaagccaca 15508005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1038 - 1138
Target Start/End: Original strand, 24021626 - 24021726
Alignment:
Q  1038 gtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttc 1137  Q
    |||||||||||||||||||||||||| ||||||  ||  ||||||||| | || || | ||||||||| || |||   ||||||||||||||||| ||||    
T  24021626 gtgattgtttcccttgatctttcgaccgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcagccaactcttcaagttc 24021725  T
Q  1138 t 1138  Q
    |    
T  24021726 t 24021726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 461
Target Start/End: Original strand, 26235981 - 26236124
Alignment:
Q  318 ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg 417  Q
    |||||| | |||||||| ||||| |||  ||| |||||| ||| || ||| ||||||||||||||||| |||||| ||||||||  |||| | |||||||    
T  26235981 ctcatcaccgaaatcctgtccttgctttgcgttaaaaccctcacgcgattcaaatgcgtgagcaagtcctggaacactctcatctctgatccaaccttcg 26236080  T
Q  418 tacaaaaacacctcaagaagtcttcacaaaacccacacatcata 461  Q
    |  | || || || |||||||| |||||||| |  |||||||||    
T  26236081 tcgacaaccatcttaagaagtcatcacaaaaacagcacatcata 26236124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1032 - 1074
Target Start/End: Original strand, 24016641 - 24016683
Alignment:
Q  1032 caatttgtgattgtttcccttgatctttcgactgagacataca 1074  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  24016641 caatttgtgattgtttctcttgatctttcgacggagacataca 24016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1024 - 1074
Target Start/End: Original strand, 26237458 - 26237508
Alignment:
Q  1024 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacataca 1074  Q
    |||||||||||||||||||| |||| ||||||||||||||  |||||||||    
T  26237458 atgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1024 - 1074
Target Start/End: Original strand, 26256619 - 26256669
Alignment:
Q  1024 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacataca 1074  Q
    |||||||||||||||||||| |||| ||||||||||| || ||||||||||    
T  26256619 atgttgagcaatttgtgattatttcgcttgatctttcaacggagacataca 26256669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 26255963 - 26256016
Alignment:
Q  349 tgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatca 402  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||||| |||||||||    
T  26255963 tgaaaaccatcgtgctattcaaatgcgtgagcaagtcttggaacactctcatca 26256016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 5e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 318 - 439
Target Start/End: Complemental strand, 11346075 - 11345954
Alignment:
Q  318 ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg 417  Q
    ||||| || ||||||||||| || |||||||||||||||||  | ||||| |||||||||||||||||||||||| ||||||||   ||| |  ||||||    
T  11346075 ctcatagccgaaatcctatcattacttaacgtgaaaaccattgtccaattcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcg 11345976  T
Q  418 tacaaaaacacctcaagaagtc 439  Q
    | ||||||||||| || |||||    
T  11345975 tccaaaaacaccttaaaaagtc 11345954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 832 - 908
Target Start/End: Complemental strand, 11345507 - 11345431
Alignment:
Q  832 catggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 908  Q
    |||||||||||| ||||||| || ||||||| |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  11345507 catggagaagtcgggtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttgattcct 11345431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 832 - 908
Target Start/End: Complemental strand, 11359385 - 11359309
Alignment:
Q  832 catggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 908  Q
    ||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| || ||||| ||| ||||||||    
T  11359385 catggagaagtcaggtcagaattctcagtttgagcgatgattgttggagaaatatcgacagttttcctgtgattcct 11359309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1040 - 1155
Target Start/End: Complemental strand, 11338786 - 11338671
Alignment:
Q  1040 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 1139  Q
    ||||||||||||||||||||| |||||||||||||  |||||||   | || |||||| |||||||  |||||  |||||||||||||||||| |||||     
T  11338786 gattgtttcccttgatctttcaactgagacatacatgcaattttgtttgccttctggtcttgatgagatcccatgctttcagccaactcttcaggttctt 11338687  T
Q  1140 atggactgcctttgct 1155  Q
     ||||| | |||||||    
T  11338686 ttggaccgactttgct 11338671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 833 - 908
Target Start/End: Complemental strand, 11338980 - 11338905
Alignment:
Q  833 atggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 908  Q
    |||||||||||| |||||| || ||||||| |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  11338980 atggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttgattcct 11338905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1040 - 1155
Target Start/End: Complemental strand, 11345311 - 11345196
Alignment:
Q  1040 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 1139  Q
    ||||||||||||||| ||||| |||||||||||||  |||||||   | || | |||||||||||| ||||||  |||||||||||||||||| |||||     
T  11345311 gattgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccaagctttcagccaactcttcaggttctt 11345212  T
Q  1140 atggactgcctttgct 1155  Q
     ||||| | |||||||    
T  11345211 ttggaccgactttgct 11345196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1040 - 1155
Target Start/End: Complemental strand, 11359189 - 11359074
Alignment:
Q  1040 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 1139  Q
    |||||| |||||||||||||| |||||| ||||||  |||||||  || || |||||||||||||| ||||||  |||| |||||||||||||| ||||     
T  11359189 gattgtctcccttgatctttcaactgaggcatacatgcaattttcactgccttctggttttgatgaggtcccatgcttttagccaactcttcattttctt 11359090  T
Q  1140 atggactgcctttgct 1155  Q
     ||||| | |||||||    
T  11359089 ttggaccgactttgct 11359074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1044 - 1155
Target Start/End: Complemental strand, 11339625 - 11339514
Alignment:
Q  1044 gtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctgatgg 1143  Q
    |||||||||||||| || | ||||||||| |  |||||||   |||| |||||||||||||| || ||  ||||||||||||||||||| |||||  |||    
T  11339625 gtttcccttgatctatcaattgagacatatatgcaattttgtttaccttctggttttgatgaggtaccctactttcagccaactcttcaggttcttttgg 11339526  T
Q  1144 actgcctttgct 1155  Q
    || | |||||||    
T  11339525 accggctttgct 11339514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 11359916 - 11359865
Alignment:
Q  376 tgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaaca 427  Q
    ||||||||||||||||| ||||||||  |||| |||||||||| ||||||||    
T  11359916 tgagcaagtcatggaacactctcatctctgatccgaccttcgtccaaaaaca 11359865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1025 - 1155
Target Start/End: Original strand, 36339960 - 36340090
Alignment:
Q  1025 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagcca 1124  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||||  || |||||||| ||  | |||||| | || || |||  | || |||||    
T  36339960 tgttgagcaattggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagcca 36340059  T
Q  1125 actcttcatgttctgatggactgcctttgct 1155  Q
     ||||||  ||||||||||||||||||||||    
T  36340060 tctcttcgggttctgatggactgcctttgct 36340090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 318 - 466
Target Start/End: Original strand, 36339250 - 36339398
Alignment:
Q  318 ctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcg 417  Q
    |||||||| ||||||||||  || |||| ||||||||||||  ||| ||| || || |||||||||||||||||| ||||||||   ||| | || |||     
T  36339250 ctcatcgccgaaatcctattgttacttagcgtgaaaaccattgtgcgattcaagtgtgtgagcaagtcatggaacactctcatctcagatccaactttca 36339349  T
Q  418 tacaaaaacacctcaagaagtcttcacaaaacccacacatcatactcac 466  Q
    |  |||  ||||| ||||| |||||||||||||| ||| ||||||||||    
T  36339350 tcaaaatgcaccttaagaaatcttcacaaaaccctcacttcatactcac 36339398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1025 - 1090
Target Start/End: Complemental strand, 25901504 - 25901439
Alignment:
Q  1025 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 1090  Q
    ||||||||||| |||||||||||| |||||||| || |||||| ||||||| || || ||||||||    
T  25901504 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacc 25901439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1025 - 1075
Target Start/End: Complemental strand, 25915522 - 25915472
Alignment:
Q  1025 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 1075  Q
    ||||||||||| |||||||||||| |||||||| || |||||| |||||||    
T  25915522 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacac 25915472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 45; Significance: 5e-16; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1035 - 1087
Target Start/End: Original strand, 5233 - 5285
Alignment:
Q  1035 tttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 1087  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  5233 tttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgct 5285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 4406 - 4494
Alignment:
Q  313 acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatc 401  Q
    |||| ||||| || |||||||| || ||||||| |||||| |||||||  ||||| || ||||| ||||| ||||||||||| ||||||    
T  4406 acgaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatc 4494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 5e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 342 - 478
Target Start/End: Original strand, 23839864 - 23840000
Alignment:
Q  342 cttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgaccttcgtacaaaaacacctcaagaagtctt 441  Q
    |||||||||||||||||| ||| ||| ||||| |||||||||||||||||| ||||||||   ||| |  |||  ||  ||||| |||| || ||||| |    
T  23839864 cttaacgtgaaaaccatcttgcgattcaaatgtgtgagcaagtcatggaacactctcatctccgatccagcctatgtcaaaaaataccttaacaagtcgt 23839963  T
Q  442 cacaaaacccacacatcatactcacaccaccaacttt 478  Q
    || | ||||||||| ||||||||| ||||||||||||    
T  23839964 caaataacccacacctcatactcaaaccaccaacttt 23840000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1024 - 1085
Target Start/End: Complemental strand, 23847398 - 23847337
Alignment:
Q  1024 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttg 1085  Q
    ||||||| ||| | |||||| ||||||||||||||||||| ||||||||||  |||||||||    
T  23847398 atgttgatcaactcgtgattctttcccttgatctttcgaccgagacatacatccaatttttg 23847337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 839 - 899
Target Start/End: Original strand, 3557376 - 3557436
Alignment:
Q  839 aagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccct 899  Q
    |||| |||| ||| ||||||||||| ||||||||  ||||||||||||||| |||||||||    
T  3557376 aagtgaggttagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 844 - 898
Target Start/End: Original strand, 3565399 - 3565453
Alignment:
Q  844 aggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccc 898  Q
    |||| ||| ||||||||||| ||||||||  ||||||||||||||| ||||||||    
T  3565399 aggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccc 3565453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1025 - 1075
Target Start/End: Complemental strand, 10571501 - 10571451
Alignment:
Q  1025 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 1075  Q
    ||||||||||| |||||||||||| |||||||| || |||||| |||||||    
T  10571501 tgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacac 10571451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 898
Target Start/End: Complemental strand, 1686691 - 1686646
Alignment:
Q  853 ttttcagtttaagtgataattgttggagaaatattgagagtttccc 898  Q
    ||||||||||| ||||||||  ||||||||||||||| ||||||||    
T  1686691 ttttcagtttaggtgataatgtttggagaaatattgaaagtttccc 1686646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1037 - 1090
Target Start/End: Original strand, 10467900 - 10467953
Alignment:
Q  1037 tgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 1090  Q
    ||||||| |||| |||||||| || |||||||||||||| ||||| ||||||||    
T  10467900 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacc 10467953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1037 - 1090
Target Start/End: Original strand, 10482038 - 10482091
Alignment:
Q  1037 tgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 1090  Q
    ||||||| |||| |||||||| || |||||||||||||| ||||| ||||||||    
T  10482038 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacc 10482091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 459
Target Start/End: Original strand, 4592 - 4738
Alignment:
Q  313 acgagctcatcgcagaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgcgtgagcaagtcatggaactctctcatcaatgattcgac 412  Q
    |||| ||| |||| |||||||||||||| ||| |||||||| |  | | | || | ||||| |||||||| ||||||||||| ||||||   ||| | |     
T  4592 acgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatctccgatcccat 4691  T
Q  413 cttcgtacaaaaacacctcaagaagtcttcacaaaacccacacatca 459  Q
    |||||| ||||  ||||||||||| || |||||||||||||||||||    
T  4692 cttcgtccaaatgcacctcaagaaatcatcacaaaacccacacatca 4738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University