View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11968_low_6 (Length: 321)
Name: NF11968_low_6
Description: NF11968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11968_low_6 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 1266 - 959
Alignment:
| Q |
13 |
catttgtgatcaaggtaacgatggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagat |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1266 |
catttgtgatcaaggtaacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagat |
1167 |
T |
|
| Q |
113 |
attaactacggtttctataattcctcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1166 |
attaactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaa |
1067 |
T |
|
| Q |
213 |
attgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaatgggatggtacgacgatgaaaaatgcatgttgcgttcctc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1066 |
attgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctc |
967 |
T |
|
| Q |
313 |
acaccgtt |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
966 |
acaccgtt |
959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 8920 - 8612
Alignment:
| Q |
13 |
catttgtgatcaaggtaacgatggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagat |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8920 |
catttgtgatcaaggtaacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagat |
8821 |
T |
|
| Q |
113 |
attaactacggtttctataattcctcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8820 |
attaactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaa |
8721 |
T |
|
| Q |
213 |
attgcctccaaaattcaactgcccttctaacacaactttgtcaaaat-cgaaaagaagcaatgggatggtacgacgatgaaaaatgcatgttgcgttcct |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8720 |
attgcctccaaaattcaactgcccttctaacacaactttgtcaaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcct |
8621 |
T |
|
| Q |
312 |
cacaccgtt |
320 |
Q |
| |
|
||||||||| |
|
|
| T |
8620 |
cacaccgtt |
8612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 6507241 - 6506934
Alignment:
| Q |
13 |
catttgtgatcaaggtaacgatggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagat |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507241 |
catttgtgatcaaggtaacgatgatggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagat |
6507142 |
T |
|
| Q |
113 |
attaactacggtttctataattcctcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507141 |
attaactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaa |
6507042 |
T |
|
| Q |
213 |
attgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaatgggatggtacgacgatgaaaaatgcatgttgcgttcctc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507041 |
attgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctc |
6506942 |
T |
|
| Q |
313 |
acaccgtt |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
6506941 |
acaccgtt |
6506934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 6521498 - 6521802
Alignment:
| Q |
17 |
tgtgatcaaggtaacgatggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatatta |
116 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| | |
|
|
| T |
6521498 |
tgtgatcaaaataatgatggtggtaactacccaacaaacagcacctaccacacaaaccttaacacccttttatccactctcacttccaacaaagatatca |
6521597 |
T |
|
| Q |
117 |
actacggtttctataattcctcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
6521598 |
actacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattg |
6521697 |
T |
|
| Q |
217 |
cctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaatgggatggtacgacgatgaaaaatgcatgttgcgttcctcacac |
316 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||| |||| || |
|
|
| T |
6521698 |
cctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaac |
6521797 |
T |
|
| Q |
317 |
cgttc |
321 |
Q |
| |
|
||||| |
|
|
| T |
6521798 |
cgttc |
6521802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 6513138 - 6512834
Alignment:
| Q |
17 |
tgtgatcaaggtaacgatggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatatta |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6513138 |
tgtgatcaaaataacgatggtggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatca |
6513039 |
T |
|
| Q |
117 |
actacggtttctataattcctcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6513038 |
actacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattg |
6512939 |
T |
|
| Q |
217 |
cctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaatgggatggtacgacgatgaaaaatgcatgttgcgttcctcacac |
316 |
Q |
| |
|
| | | |||||| ||| | ||||||||||||||||||||||||||||||| || || || ||||| || || || | |||||||||||||| |||| || |
|
|
| T |
6512938 |
cataaagaattcatctgtctttctaacacaactttgtcaaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcatac |
6512839 |
T |
|
| Q |
317 |
cgttc |
321 |
Q |
| |
|
||||| |
|
|
| T |
6512838 |
cgttc |
6512834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 6517537 - 6517241
Alignment:
| Q |
17 |
tgtgatcaaggtaacgatggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatatta |
116 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| |||||| |||||||||||||||||| || | |
|
|
| T |
6517537 |
tgtgatcaaaataacgatggtggtatctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatca |
6517438 |
T |
|
| Q |
117 |
actacggtttctataattcctcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattg |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||| | ||||| ||||||||| |||||| |
|
|
| T |
6517437 |
actacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattg |
6517338 |
T |
|
| Q |
217 |
cctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaatgggatggtacgacgatgaaaaatgcatgttgcgttcctca |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| ||||| ||||||| || |||||||| ||||| | |||||||||||||| |||| |
|
|
| T |
6517337 |
tctccaaaattcaactgtgtttctaacacaacgttgtcaaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactca |
6517241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 47713498 - 47713336
Alignment:
| Q |
41 |
aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt |
140 |
Q |
| |
|
||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||||||||| |||| ||||| |
|
|
| T |
47713498 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt |
47713399 |
T |
|
| Q |
141 |
atggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
203 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
47713398 |
atggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
47713336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 47746081 - 47745921
Alignment:
| Q |
41 |
aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt |
140 |
Q |
| |
|
||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||||||||| |||| ||||| |
|
|
| T |
47746081 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctctt |
47745982 |
T |
|
| Q |
141 |
atggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccga |
201 |
Q |
| |
|
||||| |||||| || ||||||||||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
47745981 |
atggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaacccga |
47745921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 47760413 - 47760253
Alignment:
| Q |
41 |
aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt |
140 |
Q |
| |
|
||||||||| |||| |||||||| || | |||||||| ||| || | |||| ||| ||||||||| ||| || |||||||||||||| ||| |||| |
|
|
| T |
47760413 |
aactacacagccaatagcacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttctt |
47760314 |
T |
|
| Q |
141 |
atggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccga |
201 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
47760313 |
atggccaaaacactgacaaagtaaacgccattggactctgtagaggagatgttaaacccga |
47760253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 47718292 - 47718135
Alignment:
| Q |
41 |
aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt |
140 |
Q |
| |
|
||||||||| |||| |||||||| || | ||||||| |||||| | |||| ||| |||||||||| ||| || |||||||||||||| |||| ||||| |
|
|
| T |
47718292 |
aactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctctt |
47718193 |
T |
|
| Q |
141 |
atggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacc |
198 |
Q |
| |
|
||||| |||||| |||||||||||||| |||| || || ||||||||||| ||||| |
|
|
| T |
47718192 |
atggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacc |
47718135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 321
Target Start/End: Original strand, 47777837 - 47778120
Alignment:
| Q |
38 |
ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct |
137 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||||||||| || ||| |||||||||||| |||||||| | | || || ||||||||||| |||| || |
|
|
| T |
47777837 |
ggtaactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatttct |
47777936 |
T |
|
| Q |
138 |
cttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgccct |
237 |
Q |
| |
|
| | ||| ||||| ||| | | | || |||||| | |||||||||||| | ||||| | |||||||| | |||||| | || || | || |
|
|
| T |
47777937 |
cattcggcgaaaacataaacagaatcacagccattggattatgtagaggagatataaaacctaacgattgtcatgactgcctcaacaaatccaaagcaaa |
47778036 |
T |
|
| Q |
238 |
tctaacacaactttgtcaaaatcgaaaagaagcaatgggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttc |
321 |
Q |
| |
|
||| ||||||||||||| ||| ||| |||||||| || |||||||| |||||||||||||||||||||| |||| ||||||| |
|
|
| T |
47778037 |
tctcacacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttc |
47778120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 6500410 - 6500291
Alignment:
| Q |
15 |
tttgtgatcaaggtaacgatggtggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatat |
114 |
Q |
| |
|
|||||||||||| ||| || | |||||||||||||| || |||||||| ||| ||||||||| || ||| |||| |||||||||||||||| ||| || |
|
|
| T |
6500410 |
tttgtgatcaagacaacaatagaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaat |
6500311 |
T |
|
| Q |
115 |
taactacggtttctataatt |
134 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
6500310 |
caactacggtttctacaatt |
6500291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 321
Target Start/End: Original strand, 6523520 - 6523804
Alignment:
| Q |
37 |
tggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcc |
136 |
Q |
| |
|
||||| ||||||| ||||||| | |||||| |||||||| ||| | ||||| ||||||||||||||||||| | || |||||||||||||| |||| | |
|
|
| T |
6523520 |
tggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactacggtttctacaatttc |
6523619 |
T |
|
| Q |
137 |
tcttatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgccc |
236 |
Q |
| |
|
|| | || |||||| ||||||||||||| ||||| || || ||||| ||||| || | | || |||| | ||||||| | ||||| | | |
|
|
| T |
6523620 |
tcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgttaagacaaacgagtgtcttagttgcctcaatggttcaagtaaca |
6523719 |
T |
|
| Q |
237 |
ttctaacacaactttgtcaaaatcgaaaagaagcaatgggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttc |
321 |
Q |
| |
|
||| ||||| ||||||| ||| | |||||||||||| || ||||| || |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
6523720 |
atctcacacagctttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttc |
6523804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 47781969 - 47782028
Alignment:
| Q |
262 |
aaaagaagcaatgggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttc |
321 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||| |||| ||| ||||||| |
|
|
| T |
47781969 |
aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttc |
47782028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 47604395 - 47604433
Alignment:
| Q |
46 |
cacaaccaacagcacctaccacacaaacctcaaaaccct |
84 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
47604395 |
cacatccaacagcacctaccaaacaaacctcaaaaccct |
47604433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 303
Target Start/End: Original strand, 722161 - 722305
Alignment:
| Q |
158 |
aaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaa |
257 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| || | | |||||||||||| ||||| | || |||||| || |||||||||||||| || ||| |
|
|
| T |
722161 |
aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa |
722259 |
T |
|
| Q |
258 |
atcgaaaagaagcaatgggatggtacgacgatgaaaaatgcatgtt |
303 |
Q |
| |
|
| |||||||||||||| |||| |||||| ||||||||||||||||| |
|
|
| T |
722260 |
accgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt |
722305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 704378 - 704425
Alignment:
| Q |
131 |
aattcctcttatggcataaacaccgacaaagtaaacgctattggactg |
178 |
Q |
| |
|
||||| ||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
704378 |
aattcatcttatgacataaacactgacaaagtaaacgctattggactg |
704425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 27371881 - 27371777
Alignment:
| Q |
41 |
aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt |
140 |
Q |
| |
|
||||||||| ||| ||||||||| ||| ||||| ||||||||||||| || | || ||||| ||| ||| |||||||||||||| || |||| ||| | |
|
|
| T |
27371881 |
aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat |
27371782 |
T |
|
| Q |
141 |
atggc |
145 |
Q |
| |
|
||||| |
|
|
| T |
27371781 |
atggc |
27371777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 192
Target Start/End: Complemental strand, 28831552 - 28831400
Alignment:
| Q |
40 |
taactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctct |
139 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||| || ||| |||| ||||| |||||||||| ||| || | |||||||||||| || | ||| |
|
|
| T |
28831552 |
taactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctca |
28831453 |
T |
|
| Q |
140 |
tatggcataaacaccgacaaagtaaacgctattggactgtgtagaggagatgt |
192 |
Q |
| |
|
|| |||| | || | |||||||| |||| || ||| | |||||||||||||| |
|
|
| T |
28831452 |
tacggcaaaggcaacaacaaagtatacgccataggattatgtagaggagatgt |
28831400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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