View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11968_low_8 (Length: 303)

Name: NF11968_low_8
Description: NF11968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11968_low_8
NF11968_low_8
[»] chr1 (15 HSPs)
chr1 (14-133)||(35911724-35911843)
chr1 (14-133)||(34934583-34934702)
chr1 (14-133)||(35721202-35721321)
chr1 (14-133)||(37396677-37396795)
chr1 (14-69)||(34933622-34933677)
chr1 (43-133)||(24422648-24422738)
chr1 (14-62)||(35722192-35722240)
chr1 (14-133)||(24427205-24427324)
chr1 (14-133)||(24610023-24610142)
chr1 (14-69)||(35910756-35910811)
chr1 (22-69)||(37395745-37395792)
chr1 (189-225)||(34934493-34934529)
chr1 (189-225)||(35721365-35721401)
chr1 (189-225)||(35911633-35911669)
chr1 (189-225)||(37396605-37396641)
[»] chr7 (6 HSPs)
chr7 (14-133)||(32197744-32197863)
chr7 (14-133)||(41693750-41693869)
chr7 (14-63)||(32196788-32196837)
chr7 (14-133)||(9454806-9454925)
chr7 (40-133)||(39619629-39619722)
chr7 (189-225)||(32197654-32197690)
[»] scaffold0517 (3 HSPs)
scaffold0517 (14-133)||(10419-10537)
scaffold0517 (22-69)||(11422-11469)
scaffold0517 (189-225)||(10573-10609)
[»] chr6 (2 HSPs)
chr6 (14-62)||(21953310-21953358)
chr6 (14-133)||(17516266-17516385)
[»] chr3 (3 HSPs)
chr3 (14-133)||(52402959-52403078)
chr3 (14-133)||(43641247-43641366)
chr3 (75-133)||(50563646-50563704)
[»] chr2 (2 HSPs)
chr2 (65-125)||(23861906-23861966)
chr2 (41-130)||(1777600-1777689)
[»] chr8 (1 HSPs)
chr8 (75-133)||(45517797-45517855)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 35911843 - 35911724
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  35911843 aaatggtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggtggcaa 35911744  T
Q  114 ttattttattttaactaatt 133  Q
    ||||||||||||||||||||    
T  35911743 ttattttattttaactaatt 35911724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 34934702 - 34934583
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||||    
T  34934702 aaatagtccctggtcccactttttcgatgatttgtcacatttatgcatactttgcagatgctgacggtgcaaatatgtacatgtggcatccaggtggcaa 34934603  T
Q  114 ttattttattttaactaatt 133  Q
    ||||||||||||||||||||    
T  34934602 ttattttattttaactaatt 34934583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 35721202 - 35721321
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |||||||||    
T  35721202 aaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatttacatgtggcatctaggtggcaa 35721301  T
Q  114 ttattttattttaactaatt 133  Q
    ||||||||||||||||||||    
T  35721302 ttattttattttaactaatt 35721321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 37396795 - 37396677
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |  |    
T  37396795 aaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggt-gaga 37396697  T
Q  114 ttattttattttaactaatt 133  Q
    ||||||||||||||||||||    
T  37396696 ttattttattttaactaatt 37396677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 34933622 - 34933677
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggca 69  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  34933622 aaatagtctctggtcccactttttcgatgatttgtcacatttatgcatacctggca 34933677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 24422648 - 24422738
Alignment:
Q  43 atttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaattattttattttaactaatt 133  Q
    ||||||| ||||| ||| ||  ||||| ||| ||||  ||||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  24422648 atttgtctcatttctgcctatgtggcatatgctgactatgcaaacatgtacatgtggcatccaggtggcaataatttaattttaactaatt 24422738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 35722240 - 35722192
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcata 62  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  35722240 aaatagtccctagtcccactttttcgatgatttgtcacatttatgcata 35722192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 24427324 - 24427205
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    ||||||||||||| |||||||| | | ||||||||| ||||| ||| || |||  | ||| ||||  ||||||| ||||||||||| |||||| ||||||    
T  24427324 aaatagtccctgaacccactttcttggtgatttgtctcatttttgcctatttgaaatatgctgactatgcaaacctgtacatgtggcatccagttggcaa 24427225  T
Q  114 ttattttattttaactaatt 133  Q
    |||||  |||||| ||||||    
T  24427224 ttattcaattttacctaatt 24427205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 24610023 - 24610142
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    |||||||||||   |||||||||| | ||||||||||||||| ||||||  |||||   | |||  || ||||| ||||||||||| ||||| |||||||    
T  24610023 aaatagtccctcgccccacttttttggtgatttgtcacatttgtgcatatgtggcatgagctgattgtacaaacttgtacatgtggcatccatgtggcaa 24610122  T
Q  114 ttattttattttaactaatt 133  Q
    |||| ||||||||| |||||    
T  24610123 ttatattattttaaataatt 24610142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 35910756 - 35910811
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggca 69  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||||| |||||    
T  35910756 aaatagtctctcgtcccactttttcgatgatttgtcacatttatgcatacctggca 35910811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 37395745 - 37395792
Alignment:
Q  22 cctgatcccactttttcgatgatttgtcacatttatgcatacttggca 69  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  37395745 cctggtcccactttttcgatgatttgtcacatttatgcatacctggca 37395792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 34934529 - 34934493
Alignment:
Q  189 taaggattgaataaattattttgtaaaacacactgca 225  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34934529 taaggattgaataaattattttggaaaacacactgca 34934493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 35721365 - 35721401
Alignment:
Q  189 taaggattgaataaattattttgtaaaacacactgca 225  Q
    ||||||||||||||||||||||| |||||||||||||    
T  35721365 taaggattgaataaattattttggaaaacacactgca 35721401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 35911669 - 35911633
Alignment:
Q  189 taaggattgaataaattattttgtaaaacacactgca 225  Q
    ||||||||||||||||||||||| |||||||||||||    
T  35911669 taaggattgaataaattattttggaaaacacactgca 35911633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 37396641 - 37396605
Alignment:
Q  189 taaggattgaataaattattttgtaaaacacactgca 225  Q
    ||||||||||||||||||||||| |||||||||||||    
T  37396641 taaggattgaataaattattttggaaaacacactgca 37396605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 32197863 - 32197744
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||    
T  32197863 aaatagtccctggtcccattttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggtgacaa 32197764  T
Q  114 ttattttattttaactaatt 133  Q
    ||||||||||||||||||||    
T  32197763 ttattttattttaactaatt 32197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 41693750 - 41693869
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    ||||||||||||| || ||||||| ||||||||||||||||| ||||||  |||||   | ||||||| ||||| ||||||||||  ||||| |||||||    
T  41693750 aaatagtccctgaccctacttttttgatgatttgtcacatttgtgcatatgtggcattagctgacggtacaaacttgtacatgtgacatccacgtggcaa 41693849  T
Q  114 ttattttattttaactaatt 133  Q
    |||||||||||||| |||||    
T  41693850 ttattttattttaaataatt 41693869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 32196788 - 32196837
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatac 63  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  32196788 aaatagtctctggtcccactttttcgatgatttgtcacatttatgcatac 32196837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 9454925 - 9454806
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    ||||||||||||| |||||||| | | ||||||| ||||||| | |  |  ||  || || |||| ||| |||| |||| |||||| ||||| |||||||    
T  9454925 aaatagtccctgaacccactttcttgctgatttggcacattttttctcatgtgataggtgctgactgtgtaaacttgtatatgtggcatccaagtggcaa 9454826  T
Q  114 ttattttattttaactaatt 133  Q
    ||||||||||||||||||||    
T  9454825 ttattttattttaactaatt 9454806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 39619722 - 39619629
Alignment:
Q  40 atgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaattattttattttaactaatt 133  Q
    |||||||||||||||| ||||||  |||||   | ||||  ||||||| ||||||||||  ||||| |||| |||||||||||||||| |||||    
T  39619722 atgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtggtaattattttattttaaataatt 39619629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 32197690 - 32197654
Alignment:
Q  189 taaggattgaataaattattttgtaaaacacactgca 225  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32197690 taaggattgaataaattattttggaaaacacactgca 32197654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 10419 - 10537
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |  |    
T  10419 aaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggt-gaga 10517  T
Q  114 ttattttattttaactaatt 133  Q
    ||||||||||||||||||||    
T  10518 ttattttattttaactaatt 10537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 11469 - 11422
Alignment:
Q  22 cctgatcccactttttcgatgatttgtcacatttatgcatacttggca 69  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11469 cctggtcccactttttcgatgatttgtcacatttatgcatacctggca 11422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 10573 - 10609
Alignment:
Q  189 taaggattgaataaattattttgtaaaacacactgca 225  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10573 taaggattgaataaattattttggaaaacacactgca 10609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 21953310 - 21953358
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcata 62  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  21953310 aaatagtccctagtcccactttttcgatgatttgtcacatttatgcata 21953358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 17516266 - 17516385
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    ||||||||| ||  |||||||| | ||||||||||||||||| ||||||  |||||     ||||  ||||||| ||||||||||  ||||| |||| ||    
T  17516266 aaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattaactgactatgcaaacttgtacatgtgtcatccatgtggtaa 17516365  T
Q  114 ttattttattttaactaatt 133  Q
    |||||||||||||| |||||    
T  17516366 ttattttattttaaataatt 17516385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 52403078 - 52402959
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    ||||||||| ||  |||||||| | ||||||||||||||||| ||||||  |||||   | ||||  ||||||| ||||||||||  ||||| |||| ||    
T  52403078 aaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtggtaa 52402979  T
Q  114 ttattttattttaactaatt 133  Q
    |||||||||||||| |||||    
T  52402978 ttattttattttaaataatt 52402959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 43641247 - 43641366
Alignment:
Q  14 aaatagtccctgatcccactttttcgatgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaa 113  Q
    ||||||||||||||| |||||| | | ||||||| |||||||   |  |  ||| || || |||| ||| |||| |||| |||||| ||||| |||||||    
T  43641247 aaatagtccctgatctcactttcttgttgatttggcacattttctctcatgtggtaggtgctgactgtgtaaacttgtatatgtggcatccaagtggcaa 43641346  T
Q  114 ttattttattttaactaatt 133  Q
    ||||||||||||||||||||    
T  43641347 ttattttattttaactaatt 43641366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 50563704 - 50563646
Alignment:
Q  75 tgacggtgcaaacatgtacatgtggtatccaggtggcaattattttattttaactaatt 133  Q
    |||| ||| |||| ||||||||||| || || |||||||||||||||||||||||||||    
T  50563704 tgactgtgtaaacttgtacatgtggcatacaagtggcaattattttattttaactaatt 50563646  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 23861906 - 23861966
Alignment:
Q  65 tggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaattattttatttt 125  Q
    |||||||||||||  |||||||||||| ||||||| |||||||||| |||||| |||||||    
T  23861906 tggcagatgttgattgtgcaaacatgttcatgtggcatccaggtgggaattatcttatttt 23861966  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 1777600 - 1777689
Alignment:
Q  41 tgatttgtcacatttatgcatacttggcagatgttgacggtgcaaacatgtacatgtggtatccaggtggcaattattttattttaacta 130  Q
    ||||||| ||| |||| ||| || ||||| |||||||| ||| ||||||||| | |||| ||| | ||| ||||||||||||||| ||||    
T  1777600 tgatttgccacctttaagcagacgtggcatatgttgacagtgtaaacatgtatacgtggcatctaagtgacaattattttatttttacta 1777689  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 45517855 - 45517797
Alignment:
Q  75 tgacggtgcaaacatgtacatgtggtatccaggtggcaattattttattttaactaatt 133  Q
    |||| ||| |||| |||| |||||| |||||||||| ||||||||||||||||||||||    
T  45517855 tgactgtgtaaacttgtatatgtggcatccaggtggaaattattttattttaactaatt 45517797  T

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