View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11968_low_9 (Length: 255)
Name: NF11968_low_9
Description: NF11968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11968_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 35096359 - 35096567
Alignment:
| Q |
11 |
cagagagaaggaggaacttaatggggtggccacaacaaaaattgagaagcttatagttgagctgcagggatgtcatccacatccaattgatcctgctgag |
110 |
Q |
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| T |
35096359 |
cagagagaaggaggaacttaatggggtggccacagcaaaaattgagcagcttatagttgaattacagggatgtcatccaaatccaattgaacctgctgat |
35096458 |
T |
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| Q |
111 |
cagagaatcattgatggttttacttacttcaagctcaacaatttcgagtaaacttacttgcaaattcaataaaattttaatatgatgcctatagttagtt |
210 |
Q |
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| T |
35096459 |
cagagaatcattgatggttttacgtacttcaagctcaacaatttcaagtaa----acttgcaaattaaataaaattttaatatgatgcctatagttagtt |
35096554 |
T |
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| Q |
211 |
catattcaaatat |
223 |
Q |
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||| ||| ||||| |
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| T |
35096555 |
cattttcgaatat |
35096567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 35109736 - 35109892
Alignment:
| Q |
11 |
cagagagaaggaggaacttaatggggtggccacaacaaaaattgagaagcttatagttgagctgcagggatgtcatccacatccaattgatcctgctgag |
110 |
Q |
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| T |
35109736 |
cagagagaaagaggaacttaatgaggtggccactgcaaaaattgaggaaattatagttgagttgcagggatgtcatccacaaccaattgatcctgctgag |
35109835 |
T |
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| Q |
111 |
cagagaatcattgatggttttacttacttcaagctcaacaatttcgagtaaacttac |
167 |
Q |
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| T |
35109836 |
cagagaatcattgatggttttacttacttcaagctcaacaatttcgagtaaacttac |
35109892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 35102524 - 35102636
Alignment:
| Q |
97 |
ttgatcctgctgagcagagaatcattgatggttttacttacttcaagctcaacaatttcgagtaaacttacttgcaaattcaataaaattttaatatgat |
196 |
Q |
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| T |
35102524 |
ttgatcctgctgagcagagaataatag------ttacctacttcaagctcaacaatttcgagtaaactt----gaaaattaaataaaattttaatatgat |
35102613 |
T |
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| Q |
197 |
gcctatagttagttcatattcaa |
219 |
Q |
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| T |
35102614 |
gcctatagttagttcatattcaa |
35102636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 35102468 - 35102527
Alignment:
| Q |
11 |
cagagagaaggaggaacttaatggggtggccacaacaaaaattgagaagcttatagttga |
70 |
Q |
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| T |
35102468 |
cagagagaaggaggaacttaatggggtggccacagcaaaaattgagcagcttatagttga |
35102527 |
T |
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