View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11969_low_2 (Length: 432)
Name: NF11969_low_2
Description: NF11969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11969_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 134 - 415
Target Start/End: Complemental strand, 36857535 - 36857258
Alignment:
| Q |
134 |
gtgcatttgtttttacatagtagagtgacatctagagtttggttggaggtgatgaggtggtttcaattcatttcaattcaacgtcatcacaccgtcaaat |
233 |
Q |
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| T |
36857535 |
gtgcatttgtttttacatagtagagtgacatctagagtttggttggaggtgatgaggtggtttcaattcatttcaattcaacgtcatcacaccgtcaaat |
36857436 |
T |
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| Q |
234 |
ttatttcttcatattaatggttggtctggtgagatgcgtttgaagaaattgaagagaggggcttggttaatttggctttcggcaatttgggttatttgga |
333 |
Q |
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| T |
36857435 |
ttatttcttcatattaatggttggtctggtgagatgcatttgaagaaattgaagagaggggcttggttaatttggctttcggcaatttgggttatttgga |
36857336 |
T |
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| Q |
334 |
agtcgagaaatgactggatctttaattaacaataaggtcaagtagaggttgatgaaatggtggaggaagtcaaggttctctc |
415 |
Q |
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| T |
36857335 |
agtcgagaaatgactggatct----ttaacaataaggtcaagtagaggttgatgaaatggtggaggaagtcaaggttctctc |
36857258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 36857697 - 36857562
Alignment:
| Q |
1 |
ttccgaaatctttggaagagtaaggcaccgtcaaaggtgttggcattctcatcgactttgcttcttggtcacattccaactaaggttaatcttgagaaga |
100 |
Q |
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| T |
36857697 |
ttccgaaatctttggaaaagtaaggcaccgtcaaaggtgttggcattctcatcgaccttgcttcttggtcgcattccaactaaggttaatcttgagaaga |
36857598 |
T |
|
| Q |
101 |
catcttttggcagttgatgactctaagaggtttgtg |
136 |
Q |
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| T |
36857597 |
catcttttggcagttgatgactctaagaggtttgtg |
36857562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 27895254 - 27895149
Alignment:
| Q |
253 |
gttggtctggtgagatgcgtttgaagaaattgaagagaggggcttggttaatttggctttcggcaatttgggttatttggaagtcgagaaatgactggat |
352 |
Q |
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||||||| || | ||||||||| | ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||| || |||||||||||| |||| |
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| T |
27895254 |
gttggtcaggggtgatgcgtttaaggaaattgaagaaaggggtttggttaatttggcattcggtaatttgggttatttgaaaatcgagaaatgacgggat |
27895155 |
T |
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| Q |
353 |
ctttaa |
358 |
Q |
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|||||| |
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| T |
27895154 |
ctttaa |
27895149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 27895354 - 27895304
Alignment:
| Q |
143 |
tttttacatagtagagtgacatctagagtttggttggaggtgatgaggtgg |
193 |
Q |
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||||||||| || |||||| |||||||||||||||||| |||||| ||||| |
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| T |
27895354 |
tttttacattgtcgagtgatatctagagtttggttggatgtgatgcggtgg |
27895304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 14296292 - 14296404
Alignment:
| Q |
1 |
ttccgaaatctttggaagagtaaggcaccgtcaaaggtgttggcattctcatcgactttgcttcttggtcacattccaactaaggttaatct--tgagaa |
98 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| || ||||||||| ||||||||| | |||||| |
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| T |
14296292 |
ttccgaaatctttggaagagtaaggcaccgtcagaggtgttggcattctcgtcgaccttgcttcttgatcgcattccaaccaaggttaattttgtgagaa |
14296391 |
T |
|
| Q |
99 |
gacatcttttggc |
111 |
Q |
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||||||||||||| |
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| T |
14296392 |
gacatcttttggc |
14296404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 7898325 - 7898402
Alignment:
| Q |
275 |
gaagaaattgaagagaggggcttggttaatttggctttcggcaatttgggttatttggaagtcgagaaatgactggat |
352 |
Q |
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|||||||| || ||||||||||||| ||||||||| ||||| |||||||| |||||||| || ||||||||| |||| |
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| T |
7898325 |
gaagaaatggaggagaggggcttggctaatttggcattcggttatttgggtaatttggaattctagaaatgaccggat |
7898402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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