View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1196_high_2 (Length: 455)
Name: NF1196_high_2
Description: NF1196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1196_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 238 - 453
Target Start/End: Complemental strand, 32885580 - 32885368
Alignment:
| Q |
238 |
tactttttacataaattcattcacagttattgaatatttggtgatagtaacttacttaggttggtctggtgacacggacttaagatttagaatatactct |
337 |
Q |
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| T |
32885580 |
tactttgtacataaatttattcacagttattgaatatttggtgatagtaacttacttaggttggtctg---acactgacttaagatttagaatatacttt |
32885484 |
T |
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| Q |
338 |
caaagttttagattctattatatctgatgtcaatttggataacactgtattcatcataaaatatcatattgtatctnnnnnnngaaattaagaaatgaaa |
437 |
Q |
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| T |
32885483 |
caaagttttagattccattctatctgatgtcaatttggataacactgtattcatcataaaatatcatattatatctaaaaaaagaaattaagaaatgaaa |
32885384 |
T |
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| Q |
438 |
gatattgttggagatg |
453 |
Q |
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| T |
32885383 |
gatatcgttggagatg |
32885368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 32886130 - 32885987
Alignment:
| Q |
28 |
caaattaatagatggagcaaatgatagatgattaaaaacctactaatatatggtttgattgacagcgattgcatgaagctaagttggaggcaatcttagc |
127 |
Q |
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| T |
32886130 |
caaattaaaagatggagcaaatgatagatgattaaaaacctactaatatatggtttgattgacagcgattgcatgaagc-aagttggaggcaatcttagc |
32886032 |
T |
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| Q |
128 |
ttccagactaaagagccctacttgacataacattattccacaagc |
172 |
Q |
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| T |
32886031 |
ttccagactaaagagccctacttgacatgacattatcctacaagc |
32885987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 17780871 - 17780912
Alignment:
| Q |
336 |
ctcaaagttttagattctattatatctgatgtcaatttggat |
377 |
Q |
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| T |
17780871 |
ctcaaagttttagattcgattgtttctgatgtcaatttggat |
17780912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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