View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1196_low_1 (Length: 634)
Name: NF1196_low_1
Description: NF1196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1196_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 70 - 401
Target Start/End: Original strand, 29159878 - 29160209
Alignment:
| Q |
70 |
gcatgactgataaataaactcannnnnnnnccaaatataaaaactagaatgtgatgtttcaagtctaacaaaaagcaatattatcatgtaataataatga |
169 |
Q |
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| T |
29159878 |
gcataactgataaataaactcattttttttccaaatataaaaactagaatgtgatgtttcaagtctaacaaaaagcaatattatcatgtaataataatga |
29159977 |
T |
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| Q |
170 |
gataataattttgtcaaataaaagaatgagttacagtagtact-attttttataactctggctcttaaaagacttggttctattctactcactaggtaat |
268 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
29159978 |
gataataattttgtcaaataaaataatgagttacagtaatacttattttatataactctggctcttaaaagacttggttctattctacccgctaggtaat |
29160077 |
T |
|
| Q |
269 |
tgaaatggtaagaattgaagtttataaggagacaaatttaaacgggagagttgtcccactcacgttgtctttttaccttggccttgtcttctaagttttt |
368 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
29160078 |
tgaaatggtaagaattgaagtttacaaggagacaaatttaaacggaagagttgtcccactcacgttgtcttttcacctttgccttgtcttctaagttttt |
29160177 |
T |
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| Q |
369 |
catataactagctaatccctctatgactcactc |
401 |
Q |
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| T |
29160178 |
catataactagctaat-cctctgtgactcactc |
29160209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 216 - 460
Target Start/End: Complemental strand, 35409947 - 35409708
Alignment:
| Q |
216 |
ttttataactctggctcttaaaagacttggttctattctactcactaggtaattgaaatggtaagaattgaagtttataaggagacaaatttaaacggga |
315 |
Q |
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| T |
35409947 |
ttttataactctacttcttaaaagacttggttctattatattcaataggttattgaaatggtaagaagtgaagtttataagaagacaaacttaaa-ggga |
35409849 |
T |
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| Q |
316 |
gagttgtcccactcacgttgtctttttaccttggccttgtcttctaagtttttcatataactagctaatccctctatgactcactcactccctctccggt |
415 |
Q |
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| T |
35409848 |
gatttgttccacttacattgtcttttcaccttggccttgtcttctaagtttttctcataactagcaaatccctctatgactc----actccctctcaagt |
35409753 |
T |
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| Q |
416 |
cttcattagagctcaactcttctattatagattctagctcatttt |
460 |
Q |
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| T |
35409752 |
ctttattagagctcaattcttctattataggcactagctcatttt |
35409708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 399 - 559
Target Start/End: Original strand, 29160557 - 29160709
Alignment:
| Q |
399 |
ctcactccctctccggtcttcattagagctcaactcttctattatagattctagctcattttttagtagttcctctgtgttactgtgttacttcactgag |
498 |
Q |
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| T |
29160557 |
ctcactccctctcccgtcttcattagagctcaactcttctattatagattctagctcatcttttagtagttcct--------ctgtgttacttcactggg |
29160648 |
T |
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| Q |
499 |
cttttgttacacatttctattttattttggtatgccacgccccacacttgctcttcatctc |
559 |
Q |
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| T |
29160649 |
cttttgttacacatttctattttattttggcatgccacgccccgtacttgcgcttcatctc |
29160709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 35410009 - 35409958
Alignment:
| Q |
122 |
gatgtttcaagtctaacaaaaagcaatattatcatgtaataataatgagata |
173 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410009 |
gatgtttcaggtctaacaaaaagcaatattatcatgtaataataatgagata |
35409958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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