View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1196_low_10 (Length: 322)

Name: NF1196_low_10
Description: NF1196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1196_low_10
NF1196_low_10
[»] chr8 (1 HSPs)
chr8 (29-322)||(36000282-36000575)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 36000575 - 36000282
Alignment:
Q  29 aattaagaatgctgtgtcaagttttagcatacacaaa-tcaacttcggaaactatttggaggccactaacagcaccaaatggaatctagataaagaaagt 127  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||||     
T  36000575 aattaagaatgctgtgtcaagttttagcatacacaaaatcaacttcagagactatttggaggccactaacagcaacaaatggaatctagacaaagaaagg 36000476  T
Q  128 tacatggaacatgtttcagaataattttcttttgaaagttcaacaaaccgtttctatgaccttacaaggttactaggggacgctgaccatatataataga 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| |||||||||||||||||||||    
T  36000475 tacatggaacatgtttcagaataattttcttttgaaagttcaacaaactgttaatatgaccttacaaggttactaggg-acgctgaccatatataataga 36000377  T
Q  228 gcagaactctgccaaaggatatatgcactgttattctttgattcctatgaagcctacattttaaccaactaatgtgcttgatttctgttgcaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36000376 gcagaactctgccaaaggatatatgcactgttattctttgattcctatgaagcctacatgttaaccaactaatgtgcttgatttctgttgcaaat 36000282  T

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