View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1196_low_13 (Length: 307)
Name: NF1196_low_13
Description: NF1196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1196_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 10335728 - 10335572
Alignment:
| Q |
85 |
gtagccatccattgaagagaaagaagaaagtgagacaattttcatgatttttgttggatccggtccatggttaatgtaatttagaccatagtatttaact |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10335728 |
gtagccatccattgaagagaaagaagaaagtgagacaattttcatgatttttgttggatacggtccatggttaatgtaatttagaccatagtatttaact |
10335629 |
T |
|
| Q |
185 |
ataaattgtataatgtaaactttaaacttgaaataatagaaagtaactgcacctatg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10335628 |
ataaattgtataatgtaaactttaaacttgaaataatagaaagtaactgcacctatg |
10335572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 31592763 - 31592830
Alignment:
| Q |
168 |
gaccatagtatttaactataaattgtataatgtaaactttaaacttgaaataatagaaagtaactgca |
235 |
Q |
| |
|
|||| |||||||||| || || ||||||| ||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
31592763 |
gaccgtagtatttaaatacaagttgtatattgtaagccctaaacttgaaataatagaaaggaactgca |
31592830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University