View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1196_low_18 (Length: 228)
Name: NF1196_low_18
Description: NF1196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1196_low_18 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 44264277 - 44264056
Alignment:
| Q |
7 |
actgcatggaattccaacagcatgcaatctaaatctatttattcagtctgtatctcatctataatgtgacactgtctgcttatttatttttgtaacaggc |
106 |
Q |
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| T |
44264277 |
actgcatggaattccaacagcatgcaatctaaatctatttattcagtctgtatctcatctataatgtgacactgtctgcttatttatttttgtaacaggc |
44264178 |
T |
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| Q |
107 |
acatccaagcgtgtcgaagcaagaaagaaaaagtctgtgtaggttgattgatagcaggaaactcacaccagaagcctcacttcatgcagctcaaaacgaa |
206 |
Q |
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| T |
44264177 |
acatccaagcgtgtcgaagcaagaaagaaaaagtctgtgtaggttgattgatagcaggaaactcacaccagaagcctcacttcatgcagctcaaaacgaa |
44264078 |
T |
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| Q |
207 |
cggttgcctgtgagagctgtta |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
44264077 |
cggttgcctgtgagagctgtta |
44264056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 56166009 - 56165798
Alignment:
| Q |
7 |
actgcatggaattccaacagcatgcaatctaaatctatttattcagtctgtatctcatctataatgtgacactgtctgcttatttatttttgtaacaggc |
106 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||| || |||||||||||| |||||| ||||||| ||||| ||||||||| | |||| |
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| T |
56166009 |
actgcatggaattccaacagcatgcaatctaagtccatttattcgatcagtatctcatcta--atgtgagactgtctacttatatatttttgttataggc |
56165912 |
T |
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| Q |
107 |
acatccaagcgtgtcgaagcaagaaagaaaaagtctgtgtaggttgattgatagcaggaaactcacaccagaagcctcacttcatgcagctcaaaacgaa |
206 |
Q |
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| T |
56165911 |
acatccaagtatgtcaaagcaagaaaggaaa-----------gttgattgatagcaggaaactcacaccagaagcctcacttcatgcagctcaaaacgaa |
56165823 |
T |
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| Q |
207 |
cggttgcct---gtgagagctgtta |
228 |
Q |
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| T |
56165822 |
cggttgcctgcagtgagagctgtta |
56165798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 2837248 - 2837359
Alignment:
| Q |
97 |
tgtaacaggcacatccaagcgtgtcgaagcaagaaagaaaaagtctgtgtaggttgattgatagcaggaaactcacaccagaagcctcacttcatgcagc |
196 |
Q |
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||||||||||||||||||| || || ||||||||||| || |||| || || | || ||| |||||||||| |||| |||||| |||||||||||||| |
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| T |
2837248 |
tgtaacaggcacatccaagtgtatcaaagcaagaaaggaagggtctatgcagactaatagattgcaggaaactaacacaagaagcatcacttcatgcagc |
2837347 |
T |
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| Q |
197 |
tcaaaacgaacg |
208 |
Q |
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| T |
2837348 |
acaaaacgaacg |
2837359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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