View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1196_low_2 (Length: 474)
Name: NF1196_low_2
Description: NF1196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1196_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 81 - 430
Target Start/End: Original strand, 3904264 - 3904613
Alignment:
| Q |
81 |
ataatcgtgatgtgcattggaaagatatttgtacttaagaattcgaaaaataaatgatatttatattcaaaaagaattgctaagaaattttcattatatc |
180 |
Q |
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| T |
3904264 |
ataatcgtgatgtgcattggaaagatatttgtatttaagaattcaaaaaataaatgatatttatatttaaaaagaattgctaataaattttcattatatc |
3904363 |
T |
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| Q |
181 |
agcttgtgtatttattttggttttctatttatgtggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggtttta |
280 |
Q |
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| T |
3904364 |
agcttttatatttattttagtttgctatttatgtggctgtaaatattagatacattcgcttatgtatatcaatttattttggttagttacttaggtttta |
3904463 |
T |
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| Q |
281 |
tcaatggaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattccaatttcttttgcttaacaaaatatagcatattaaaaagcattaggga |
380 |
Q |
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| T |
3904464 |
tcaatagaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattccaatttcttttgcttaacaaaatatagcatattaaaaagcattaggga |
3904563 |
T |
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| Q |
381 |
tctcatggggtgaatctcaattgatttcaacatttagtggttggatttgg |
430 |
Q |
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| T |
3904564 |
tctcatgggttgaatgtcaattgatttcaacattcagtggttggaattgg |
3904613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 214 - 363
Target Start/End: Original strand, 3907561 - 3907711
Alignment:
| Q |
214 |
tggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggttttatcaatggaacgtcgaaacgtctcgtgttata-t |
312 |
Q |
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| T |
3907561 |
tggctgtaaattttagatagattcgcttatgtatatcaatttatttgggttagttacttaggttttat-tttgggacgtcgaaacgtctcattttatagt |
3907659 |
T |
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| Q |
313 |
agtatcaagcagtctcattcc-aatttcttttgcttaacaaaatatagcata |
363 |
Q |
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| T |
3907660 |
agtatcaagcaatctcattccaaattttttttgcttaacaaaatatagcata |
3907711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 3906908 - 3906997
Alignment:
| Q |
33 |
aaatgttttattttctctcctgtacctgttttaaacaaacttatat----aaataatcgtgatgtgcattggaaagatatttgtacttaa |
118 |
Q |
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| T |
3906908 |
aaatgttctattttctttcttgtacctgttttacacaaacttatatcaataaataatcgtgatgtgcatgggaaagatatttgtatttaa |
3906997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 3904060 - 3904107
Alignment:
| Q |
30 |
agaaaatgttttattttctctcctgtacctgttttaaacaaacttata |
77 |
Q |
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| T |
3904060 |
agaaaatgttttattttctctcttgtacctgttttaaacaaacttata |
3904107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 3906983 - 3907021
Alignment:
| Q |
136 |
gatatttatattcaaaaagaattgctaagaaattttcat |
174 |
Q |
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| T |
3906983 |
gatatttgtatttaaaaagaattgctaagaaattttcat |
3907021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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