View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1196_low_5 (Length: 372)

Name: NF1196_low_5
Description: NF1196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1196_low_5
NF1196_low_5
[»] chr1 (2 HSPs)
chr1 (30-354)||(23221848-23222172)
chr1 (180-265)||(25131244-25131329)
[»] chr8 (1 HSPs)
chr8 (169-351)||(16053792-16053974)
[»] chr4 (1 HSPs)
chr4 (169-354)||(1697409-1697594)
[»] chr6 (2 HSPs)
chr6 (172-285)||(15577265-15577378)
chr6 (169-232)||(18388069-18388132)
[»] chr3 (1 HSPs)
chr3 (261-352)||(14426192-14426283)
[»] chr2 (3 HSPs)
chr2 (189-339)||(9501116-9501263)
chr2 (178-250)||(29709435-29709507)
chr2 (281-339)||(28279732-28279790)
[»] chr5 (4 HSPs)
chr5 (279-333)||(17026189-17026243)
chr5 (221-339)||(24840263-24840382)
chr5 (213-259)||(16604594-16604640)
chr5 (235-275)||(24319135-24319175)
[»] chr7 (1 HSPs)
chr7 (205-265)||(16166419-16166479)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 30 - 354
Target Start/End: Original strand, 23221848 - 23222172
Alignment:
Q  30 ccctaatggagcattggagttagcagacccataaagaaacatcactttgaaggttaatggtcaaagattgaaggtatacctaaaaaccggacaaagagga 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  23221848 ccctaatggagcattggagttagcagacccataaagaaacatcactttgaaggttaatggtcaaagattgaaggtatacctagaaaccgaacaaaaagga 23221947  T
Q  130 gcgaattcagaagaagaaagaggtaaaatttatttgcatgacaaggaacctgaaggtttggggttcctaagctcaccttagacaaatgtgtcaagctcga 229  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23221948 gtgaattcagaagaagaaagaggtaaaatttatttgcatgacaaggaacctgaaggtttggggttcctaagctcaccttagacaaatgtgtcaagctcga 23222047  T
Q  230 gactctaaacaagcgttgaatgtgaggcaatccatatttttattttgaatcatttaaatttcagtcatttattttacatagccattccatctcataattt 329  Q
    | |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23222048 ggctctaaacaagcgttgaatgtgaggcaacccatatttttattttaaatcatttaaatttcagtcatttattttacatagccactccatctcataattt 23222147  T
Q  330 atttcttttatcgtttctaactcgc 354  Q
    ||||||||||| |||||||||||||    
T  23222148 atttcttttattgtttctaactcgc 23222172  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 25131329 - 25131244
Alignment:
Q  180 tgaaggtttggggttcctaagctcaccttagacaaatgtgtcaagctcgagactctaaacaagcgttgaatgtgaggcaatccata 265  Q
    |||| |||||||| ||| |||||||  ||||| ||||| ||||||||| |||  |||||||||||||||||| ||| ||| |||||    
T  25131329 tgaaagtttggggctcccaagctcagtttagataaatgcgtcaagctcaagatgctaaacaagcgttgaatgggagacaacccata 25131244  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 351
Target Start/End: Complemental strand, 16053974 - 16053792
Alignment:
Q  169 gacaaggaacctgaaggtttggggttcctaagctcaccttagacaaatgtgtcaagctcgagactctaaacaagcgttgaatgtgaggcaatccatattt 268  Q
    ||||||||  |||||||||| ||||||| |||||||||||| |  |||| ||||| |||||||| ||||||||||||||||||  || ||| |||||| |    
T  16053974 gacaaggatactgaaggtttagggttcccaagctcaccttatatgaatgcgtcaaactcgagacgctaaacaagcgttgaatggaagacaacccatatgt 16053875  T
Q  269 ttattttgaatcatttaaatttcagtcatttattttacatagccattccatctcataatttatttcttttatcgtttctaact 351  Q
    |||| |  | |||||||||||  | | |||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||||    
T  16053874 ttatctccagtcatttaaattgtattaatttattttacatagccattccatatcataatttctttcttttattgttgctaact 16053792  T

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Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 169 - 354
Target Start/End: Complemental strand, 1697594 - 1697409
Alignment:
Q  169 gacaaggaacctgaaggtttggggttcctaagctcaccttagacaaatgtgtcaagctcgagactctaaacaagcgttgaatgtgaggcaatccatattt 268  Q
    |||||||||| |||||||||||| ||||||| |||| | |||||| ||| |||||||| ||||||||||||||| |||||||| ||||||| ||||||||    
T  1697594 gacaaggaacttgaaggtttgggattcctaaactcaacatagacacatgcgtcaagcttgagactctaaacaagagttgaatgggaggcaacccatattt 1697495  T
Q  269 ttattttgaatcatttaaatttcagtcatttattttacatagccattccatctcataatttatttcttttatcgtttctaactcgc 354  Q
    ||||||| ||  | || |||||||  ||||| |||| |||||||| ||  ||||| ||||| |||||||||  ||| |||||||||    
T  1697494 ttattttcaagtaatttaatttcaaccatttcttttgcatagccactctttctcacaatttctttcttttactgttgctaactcgc 1697409  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 15577378 - 15577265
Alignment:
Q  172 aaggaacctgaaggtttggggttcctaagctcaccttagacaaatgtgtcaagctcgagactctaaacaagcgttgaatgtgaggcaatccatattttta 271  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||  |||||| ||||||  |||||||||||||||||| ||||||| ||||||||| |    
T  15577378 aaggaacctgaaggtttggggttctcaagctcaccttacacaaataagtcaagttcgagatgctaaacaagcgttgaatgggaggcaacccatattttaa 15577279  T
Q  272 ttttgaatcattta 285  Q
    |||| | |||||||    
T  15577278 ttttcagtcattta 15577265  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 18388069 - 18388132
Alignment:
Q  169 gacaaggaacctgaaggtttggggttcctaagctcaccttagacaaatgtgtcaagctcgagac 232  Q
    |||| |||||||| ||| | |||||||| ||||||| |||||||| ||||||||||||||||||    
T  18388069 gacatggaacctggaggataggggttcccaagctcaacttagacacatgtgtcaagctcgagac 18388132  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 14426192 - 14426283
Alignment:
Q  261 ccatatttttattttgaatcatttaaatttcagtcatttattttacatagccattccatctcataatttatttcttttatcgtttctaactc 352  Q
    ||||||||||||||| | |||||||| |||||||||||||||||||||||||| || |||||||||||| ||| |||||| ||| |||||||    
T  14426192 ccatatttttattttaagtcatttaagtttcagtcatttattttacatagccactcaatctcataatttctttattttattgttgctaactc 14426283  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 339
Target Start/End: Original strand, 9501116 - 9501263
Alignment:
Q  189 ggggttcctaagctcaccttagacaaatgtgtcaagctcgagactctaaacaagcgttgaatgtgaggcaatccatattttta-ttttgaatcatttaaa 287  Q
    |||||||| ||||||| |||||||| ||| |||||||||||||   ||||||| ||||||||| ||||||| ||||||||||| |||| | |||||| ||    
T  9501116 ggggttcccaagctcaacttagacacatgcgtcaagctcgagatattaaacaaacgttgaatgggaggcaacccatatttttatttttcagtcatttcaa 9501215  T
Q  288 tttcagtcatttattttacatagccattccatctcataatttatttctttta 339  Q
    ||    ||| | |||||||||| ||| ||||||||||||||| |||||||||    
T  9501216 tt----tcaataattttacatatccactccatctcataatttctttctttta 9501263  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 29709435 - 29709507
Alignment:
Q  178 cctgaaggtttggggttcctaagctcaccttagacaaatgtgtcaagctcgagactctaaacaagcgttgaat 250  Q
    ||||||| ||||| | ||| || | |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  29709435 cctgaagttttggagctcccaaccacaccttagacaaatgtgtcaagctcgagacgctaaacaaacgttgaat 29709507  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 28279790 - 28279732
Alignment:
Q  281 atttaaatttcagtcatttattttacatagccattccatctcataatttatttctttta 339  Q
    |||||||||||| ||| |||||||||||||||| || |||| |||| || |||||||||    
T  28279790 atttaaatttcattcacttattttacatagccactcaatcttataagttctttctttta 28279732  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 17026189 - 17026243
Alignment:
Q  279 tcatttaaatttcagtcatttattttacatagccattccatctcataatttattt 333  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  17026189 tcattttaatttctgtcatttattttacatagccagtccatctcataatttattt 17026243  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 24840263 - 24840382
Alignment:
Q  221 caagctcgagactctaaacaagcgttgaatgtgaggcaatccatattttt-attttgaatcatttaaatttcagtcatttattttacatagccattccat 319  Q
    ||||||| |||| |||||||| || | |||| || | || |||| ||||| ||||| | | |||| ||||||||||||||||||||||||||||||| |     
T  24840263 caagctcaagacgctaaacaatcgctaaatgggaagaaacccatttttttcattttcagtaattttaatttcagtcatttattttacatagccattctag 24840362  T
Q  320 ctcataatttatttctttta 339  Q
    |||||||||| |||| ||||    
T  24840363 ctcataatttctttcgttta 24840382  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 16604640 - 16604594
Alignment:
Q  213 aaatgtgtcaagctcgagactctaaacaagcgttgaatgtgaggcaa 259  Q
    |||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  16604640 aaatgtgtcaagcttgagacactaaacaagtgttgaatgggaggcaa 16604594  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 24319135 - 24319175
Alignment:
Q  235 taaacaagcgttgaatgtgaggcaatccatatttttatttt 275  Q
    |||| |||||||||||| ||||||| |||||||||||||||    
T  24319135 taaaaaagcgttgaatgggaggcaacccatatttttatttt 24319175  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 16166419 - 16166479
Alignment:
Q  205 ccttagacaaatgtgtcaagctcgagactctaaacaagcgttgaatgtgaggcaatccata 265  Q
    |||||||||| || || || |||||||| |||||||||||||||||| ||||||| |||||    
T  16166419 ccttagacaattgcgttaaactcgagacgctaaacaagcgttgaatgggaggcaacccata 16166479  T

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