View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1196_low_7 (Length: 366)
Name: NF1196_low_7
Description: NF1196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1196_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 357
Target Start/End: Complemental strand, 29320312 - 29319983
Alignment:
| Q |
30 |
gacatttctacaattcgaccttagatattacaatatttctcccaaatgtttaattagtcgttcatcnnnnnnnnncttttctcacatgttataaaacatt |
129 |
Q |
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| T |
29320312 |
gacatttctacaattcgaccttagatattacaatatttctcccaaatgtttaattagtcattcatcttcttttt--ttttctcacatgttataaaacatt |
29320215 |
T |
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| Q |
130 |
aatttctactcggcccgcattgctacatttttagaacatgcatgtaagaatatattaaaacaaaaaatagctacatgtttgacatgttagaatcaataat |
229 |
Q |
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| T |
29320214 |
aatttctactcgtcccgcattgctacatttttagaacatgcatgtaagaatatattaaaacaaaaaatagctacatgtttgacatgttagaatcaataat |
29320115 |
T |
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| Q |
230 |
cct----tatccacgatgagttcctgagacacaactcatctaaatttcattaaaaaacatcaattgaacttttttggggtactatattaattgaaaatta |
325 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29320114 |
ccttatatatccacgatgagtccctgagacacaactcatctaaatttcattaaaaaacatcaattgaacttttttggggtactatattaattgaaaatta |
29320015 |
T |
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| Q |
326 |
agataaaatactaaataaatatatagaataat |
357 |
Q |
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||||||||||||||||| ||||||||| |||| |
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| T |
29320014 |
agataaaatactaaatatatatatagagtaat |
29319983 |
T |
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