View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1196_low_9 (Length: 327)

Name: NF1196_low_9
Description: NF1196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1196_low_9
NF1196_low_9
[»] chr3 (1 HSPs)
chr3 (27-323)||(7957779-7958076)
[»] chr1 (2 HSPs)
chr1 (27-244)||(5594900-5595112)
chr1 (31-80)||(12656889-12656938)
[»] chr4 (2 HSPs)
chr4 (29-105)||(11773820-11773896)
chr4 (38-80)||(7320595-7320637)
[»] chr7 (1 HSPs)
chr7 (150-238)||(3743928-3744016)
[»] chr6 (1 HSPs)
chr6 (30-175)||(15107118-15107263)
[»] chr5 (1 HSPs)
chr5 (47-228)||(23409623-23409804)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 323
Target Start/End: Original strand, 7957779 - 7958076
Alignment:
Q  27 tcaggttatgctaaatcatggtgttctttcatgcatctgatttggtttgctagtgtttggaatatttagaaggaaataattgacaggttatttaatggca 126  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || || |||||||||||| |    
T  7957779 tcaggttatgctaaatcatggtgttctttcatgcatctgatctggtttgctagtgtttgaaatatttagaaggaaataaatggcatgttatttaatggta 7957878  T
Q  127 gagaaagttctccccttcagctggtggagaatattaaacttctttctttccgatggattacaactaaatatgttgttttccatcatagtttttataattg 226  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  7957879 gagaaaggtatccccttcagctggtggagaatattaaacttctttctttccgatggattacaactaaatttgttgtttttcatcatagtttttataattg 7957978  T
Q  227 gtaccaaaacccatttgtgtgtgtaggtatcgcctaattagtgcttcaaattgttgaactgttatatttgttagactatcttctcc-ggtacatcttg 323  Q
    || |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7957979 gtgccaaaacccatttgtgtgcgtgggtatcgcctaattaatgcttcaaattgttgaactgttatatttgttagactatcttctccgggtacatcttg 7958076  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 5594900 - 5595112
Alignment:
Q  27 tcaggttatgctaaatcatggtgttctttcatgcatctgatttggtttgctagtgtttggaatatttagaaggaaataattgacaggttatttaatggca 126  Q
    |||||||||||||||||| |||||||  ||||||||||||| |||||||| ||||  |||   || | |||||||| || |||| ||||||||||||| |    
T  5594900 tcaggttatgctaaatcacggtgttcactcatgcatctgatctggtttgccagtgcatgggtcatatggaaggaaagaaatgacgggttatttaatggta 5594999  T
Q  127 gagaaagttctccccttcagctggtggagaatattaaacttctttctttccgatggattacaactaaatatgttgttttccatcatagtttttataattg 226  Q
     |||||  ||||| ||| || |||||||| |||||||||||||||||||| ||||||||| | | |||| | ||||||||||| ||||     |||||||    
T  5595000 aagaaaaatctcctctttagatggtggaggatattaaacttctttctttctgatggattaaagcaaaatttattgttttccattatag-----ataattg 5595094  T
Q  227 gtaccaaaacccatttgt 244  Q
    || ||||||| |||||||    
T  5595095 gtgccaaaactcatttgt 5595112  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 12656889 - 12656938
Alignment:
Q  31 gttatgctaaatcatggtgttctttcatgcatctgatttggtttgctagt 80  Q
    ||||||||||||||  || ||||||||||||| |||||||||||||||||    
T  12656889 gttatgctaaatcaatgtattctttcatgcatttgatttggtttgctagt 12656938  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 11773820 - 11773896
Alignment:
Q  29 aggttatgctaaatcatggtgttctttcatgcatctgatttggtttgctagtgtttggaatatttagaaggaaataa 105  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||| | || |   ||||||||||||||||    
T  11773820 aggttatgctaaatcaaggtgttctttcatgcatttgatttggtttgctagcgcttcggtgatttagaaggaaataa 11773896  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 7320595 - 7320637
Alignment:
Q  38 taaatcatggtgttctttcatgcatctgatttggtttgctagt 80  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  7320595 taaatcaaggtgttctttaatgcatctgatttggtttgctagt 7320637  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 3743928 - 3744016
Alignment:
Q  150 gtggagaatattaaacttctttctttccgatggattacaactaaatatgttgttttccatcatagtttttataattggtaccaaaaccc 238  Q
    |||||||||||||| |||||||  ||  ||||| ||| |||||||| ||||||||| ||| |||| ||| ||||||||| |||||||||    
T  3743928 gtggagaatattaagcttcttttcttttgatggtttaaaactaaatttgttgttttacattatagctttcataattggtgccaaaaccc 3744016  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 15107118 - 15107263
Alignment:
Q  30 ggttatgctaaatcatggtgttctttcatgcatctgatttggtttgctagtgtttggaatatttagaaggaaataattgacaggttatttaatggcagag 129  Q
    ||||||||||||||| |||| |||||||||    ||||||||||||| |||  |||||  |||| |||||||| || ||| ||| | |||  ||||| ||    
T  15107118 ggttatgctaaatcaaggtgctctttcatgttattgatttggtttgcgagttcttggatgatttggaaggaaagaaatgataggatttttcgtggcaaag 15107217  T
Q  130 aaagttctccccttcagctggtggagaatattaaacttctttcttt 175  Q
    ||| ||||||  || || |  ||||||||||||| |||||||||||    
T  15107218 aaaattctcctattaagtttttggagaatattaagcttctttcttt 15107263  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 23409623 - 23409804
Alignment:
Q  47 gtgttctttcatgcatctgatttggtttgctagtgtttggaatatttagaaggaaataattgacaggttatttaatggcagagaaagttctccccttcag 146  Q
    |||||||||||||||| |||| || |||||||||  ||| |  |||| ||||||||||| ||| ||| ||||  ||||   ||||| |||||   |||||    
T  23409623 gtgttctttcatgcatttgatctgatttgctagttcttgaatgatttggaaggaaataaatgataggctattccatggttaagaaaattctcttgttcag 23409722  T
Q  147 ctggtggagaatattaaacttctttctttccgatggattacaactaaatatgttgttttccatcatagtttttataattggt 228  Q
    ||  |||||||| |||| |||||||| ||  | ||| ||| || ||||| ||||||||| |||  ||| ||| |||||||||    
T  23409723 cttttggagaatgttaagcttctttccttttggtggtttaaaattaaatttgttgtttttcattgtagctttcataattggt 23409804  T

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